Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11735 and HMPREF1058_RS11730 are separated by 3 nucleotides HMPREF1058_RS11730 and HMPREF1058_RS11725 are separated by 83 nucleotides
HMPREF1058_RS11735: HMPREF1058_RS11735 - signal peptidase, at 302,650 to 304,074
_RS11735
HMPREF1058_RS11730: HMPREF1058_RS11730 - 4-hydroxy-tetrahydrodipicolinate reductase, at 304,078 to 304,833
_RS11730
HMPREF1058_RS11725: HMPREF1058_RS11725 - DUF2851 family protein, at 304,917 to 306,182
_RS11725
Position (kb) 304
305 Strain fitness (log2 ratio) -2
-1
0
1
2 at 304.091 kb on - strand at 304.129 kb on - strand at 304.565 kb on - strand, within HMPREF1058_RS11730 at 304.650 kb on - strand, within HMPREF1058_RS11730 at 304.659 kb on - strand, within HMPREF1058_RS11730 at 304.847 kb on - strand at 304.879 kb on - strand at 304.903 kb on + strand at 304.903 kb on + strand at 304.904 kb on - strand at 304.930 kb on + strand at 304.930 kb on + strand at 304.935 kb on + strand at 304.936 kb on - strand at 305.004 kb on - strand at 305.173 kb on + strand, within HMPREF1058_RS11725 at 305.174 kb on - strand, within HMPREF1058_RS11725 at 305.174 kb on - strand, within HMPREF1058_RS11725 at 305.230 kb on + strand, within HMPREF1058_RS11725 at 305.266 kb on - strand, within HMPREF1058_RS11725 at 305.292 kb on + strand, within HMPREF1058_RS11725 at 305.460 kb on - strand, within HMPREF1058_RS11725 at 305.616 kb on + strand, within HMPREF1058_RS11725 at 305.637 kb on + strand, within HMPREF1058_RS11725 at 305.644 kb on - strand, within HMPREF1058_RS11725 at 305.644 kb on - strand, within HMPREF1058_RS11725 at 305.666 kb on + strand, within HMPREF1058_RS11725 at 305.729 kb on - strand, within HMPREF1058_RS11725 at 305.729 kb on - strand, within HMPREF1058_RS11725 at 305.803 kb on + strand, within HMPREF1058_RS11725 at 305.804 kb on - strand, within HMPREF1058_RS11725
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 304,091 - -0.2 304,129 - -1.4 304,565 - HMPREF1058_RS11730 0.64 -1.3 304,650 - HMPREF1058_RS11730 0.76 -1.5 304,659 - HMPREF1058_RS11730 0.77 -1.1 304,847 - -1.9 304,879 - -0.1 304,903 + +0.4 304,903 + -0.6 304,904 - -0.8 304,930 + -0.2 304,930 + +0.7 304,935 + -0.6 304,936 - +0.4 305,004 - -1.4 305,173 + HMPREF1058_RS11725 0.20 +2.4 305,174 - HMPREF1058_RS11725 0.20 +0.4 305,174 - HMPREF1058_RS11725 0.20 +0.2 305,230 + HMPREF1058_RS11725 0.25 -0.9 305,266 - HMPREF1058_RS11725 0.28 -0.6 305,292 + HMPREF1058_RS11725 0.30 +0.2 305,460 - HMPREF1058_RS11725 0.43 +0.3 305,616 + HMPREF1058_RS11725 0.55 -0.1 305,637 + HMPREF1058_RS11725 0.57 -1.1 305,644 - HMPREF1058_RS11725 0.57 -0.9 305,644 - HMPREF1058_RS11725 0.57 +0.7 305,666 + HMPREF1058_RS11725 0.59 -0.4 305,729 - HMPREF1058_RS11725 0.64 -0.3 305,729 - HMPREF1058_RS11725 0.64 -0.4 305,803 + HMPREF1058_RS11725 0.70 -0.2 305,804 - HMPREF1058_RS11725 0.70 +0.1
Or see this region's nucleotide sequence