Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11630 and HMPREF1058_RS11625 are separated by 103 nucleotides HMPREF1058_RS11625 and HMPREF1058_RS11620 are separated by 2 nucleotides HMPREF1058_RS11620 and HMPREF1058_RS11615 are separated by 17 nucleotides
HMPREF1058_RS11630: HMPREF1058_RS11630 - phosphatase PAP2 family protein, at 331,029 to 331,640
_RS11630
HMPREF1058_RS11625: HMPREF1058_RS11625 - S41 family peptidase, at 331,744 to 333,345
_RS11625
HMPREF1058_RS11620: HMPREF1058_RS11620 - pantetheine-phosphate adenylyltransferase, at 333,348 to 333,803
_RS11620
HMPREF1058_RS11615: HMPREF1058_RS11615 - type IIA DNA topoisomerase subunit B, at 333,821 to 335,698
_RS11615
Position (kb) 331
332
333
334 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 330.758 kb on + strand at 330.759 kb on - strand at 330.760 kb on + strand at 330.789 kb on + strand at 330.793 kb on - strand at 330.882 kb on - strand at 330.882 kb on - strand at 330.883 kb on + strand at 330.930 kb on - strand at 331.138 kb on + strand, within HMPREF1058_RS11630 at 331.196 kb on + strand, within HMPREF1058_RS11630 at 331.197 kb on - strand, within HMPREF1058_RS11630 at 331.197 kb on - strand, within HMPREF1058_RS11630 at 331.257 kb on + strand, within HMPREF1058_RS11630 at 331.262 kb on - strand, within HMPREF1058_RS11630 at 331.262 kb on - strand, within HMPREF1058_RS11630 at 331.292 kb on + strand, within HMPREF1058_RS11630 at 331.292 kb on + strand, within HMPREF1058_RS11630 at 331.297 kb on - strand, within HMPREF1058_RS11630 at 331.310 kb on + strand, within HMPREF1058_RS11630 at 331.312 kb on + strand, within HMPREF1058_RS11630 at 331.316 kb on - strand, within HMPREF1058_RS11630 at 331.337 kb on - strand, within HMPREF1058_RS11630 at 331.363 kb on - strand, within HMPREF1058_RS11630 at 331.450 kb on - strand, within HMPREF1058_RS11630 at 331.462 kb on - strand, within HMPREF1058_RS11630 at 331.462 kb on - strand, within HMPREF1058_RS11630 at 331.590 kb on + strand at 331.591 kb on - strand at 331.610 kb on + strand at 331.634 kb on - strand at 331.664 kb on + strand at 331.712 kb on + strand at 331.732 kb on - strand at 331.734 kb on - strand at 331.827 kb on + strand at 331.842 kb on - strand at 331.859 kb on - strand at 331.929 kb on + strand, within HMPREF1058_RS11625 at 332.003 kb on + strand, within HMPREF1058_RS11625 at 332.004 kb on - strand, within HMPREF1058_RS11625 at 332.004 kb on - strand, within HMPREF1058_RS11625 at 332.025 kb on - strand, within HMPREF1058_RS11625 at 332.112 kb on - strand, within HMPREF1058_RS11625 at 332.174 kb on + strand, within HMPREF1058_RS11625 at 332.177 kb on - strand, within HMPREF1058_RS11625 at 332.177 kb on - strand, within HMPREF1058_RS11625 at 332.193 kb on + strand, within HMPREF1058_RS11625 at 332.259 kb on + strand, within HMPREF1058_RS11625 at 332.259 kb on + strand, within HMPREF1058_RS11625 at 332.259 kb on + strand, within HMPREF1058_RS11625 at 332.259 kb on + strand, within HMPREF1058_RS11625 at 332.259 kb on + strand, within HMPREF1058_RS11625 at 332.260 kb on - strand, within HMPREF1058_RS11625 at 332.260 kb on - strand, within HMPREF1058_RS11625 at 332.303 kb on + strand, within HMPREF1058_RS11625 at 332.335 kb on - strand, within HMPREF1058_RS11625 at 332.339 kb on + strand, within HMPREF1058_RS11625 at 332.623 kb on - strand, within HMPREF1058_RS11625 at 332.760 kb on + strand, within HMPREF1058_RS11625 at 332.760 kb on + strand, within HMPREF1058_RS11625 at 332.784 kb on + strand, within HMPREF1058_RS11625 at 332.787 kb on - strand, within HMPREF1058_RS11625 at 332.913 kb on + strand, within HMPREF1058_RS11625 at 332.916 kb on + strand, within HMPREF1058_RS11625 at 332.917 kb on - strand, within HMPREF1058_RS11625 at 332.935 kb on + strand, within HMPREF1058_RS11625 at 332.952 kb on + strand, within HMPREF1058_RS11625 at 333.054 kb on + strand, within HMPREF1058_RS11625 at 333.061 kb on + strand, within HMPREF1058_RS11625 at 333.133 kb on - strand, within HMPREF1058_RS11625 at 333.206 kb on - strand at 333.246 kb on + strand at 333.333 kb on + strand at 333.333 kb on + strand at 333.334 kb on - strand at 333.336 kb on + strand at 333.336 kb on + strand at 333.336 kb on + strand at 333.338 kb on + strand at 333.339 kb on - strand at 333.339 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 330,758 + +1.6 330,759 - -1.3 330,760 + +0.2 330,789 + -0.6 330,793 - +0.7 330,882 - +1.2 330,882 - -1.1 330,883 + +3.4 330,930 - +0.5 331,138 + HMPREF1058_RS11630 0.18 +0.4 331,196 + HMPREF1058_RS11630 0.27 +0.3 331,197 - HMPREF1058_RS11630 0.27 -1.6 331,197 - HMPREF1058_RS11630 0.27 -0.8 331,257 + HMPREF1058_RS11630 0.37 +0.6 331,262 - HMPREF1058_RS11630 0.38 -3.2 331,262 - HMPREF1058_RS11630 0.38 +0.2 331,292 + HMPREF1058_RS11630 0.43 -0.9 331,292 + HMPREF1058_RS11630 0.43 -0.5 331,297 - HMPREF1058_RS11630 0.44 -1.0 331,310 + HMPREF1058_RS11630 0.46 -1.0 331,312 + HMPREF1058_RS11630 0.46 -1.0 331,316 - HMPREF1058_RS11630 0.47 +0.4 331,337 - HMPREF1058_RS11630 0.50 +3.0 331,363 - HMPREF1058_RS11630 0.55 +0.3 331,450 - HMPREF1058_RS11630 0.69 +1.6 331,462 - HMPREF1058_RS11630 0.71 -1.2 331,462 - HMPREF1058_RS11630 0.71 -0.7 331,590 + +0.1 331,591 - -0.1 331,610 + -0.7 331,634 - +1.0 331,664 + -0.2 331,712 + +2.0 331,732 - +0.4 331,734 - +0.1 331,827 + -1.8 331,842 - -1.9 331,859 - -1.4 331,929 + HMPREF1058_RS11625 0.12 -1.8 332,003 + HMPREF1058_RS11625 0.16 -1.4 332,004 - HMPREF1058_RS11625 0.16 -0.1 332,004 - HMPREF1058_RS11625 0.16 -1.3 332,025 - HMPREF1058_RS11625 0.18 -0.9 332,112 - HMPREF1058_RS11625 0.23 -1.8 332,174 + HMPREF1058_RS11625 0.27 -1.4 332,177 - HMPREF1058_RS11625 0.27 -0.6 332,177 - HMPREF1058_RS11625 0.27 -1.2 332,193 + HMPREF1058_RS11625 0.28 -1.4 332,259 + HMPREF1058_RS11625 0.32 -1.8 332,259 + HMPREF1058_RS11625 0.32 -2.6 332,259 + HMPREF1058_RS11625 0.32 -1.2 332,259 + HMPREF1058_RS11625 0.32 -1.7 332,259 + HMPREF1058_RS11625 0.32 -0.1 332,260 - HMPREF1058_RS11625 0.32 -1.3 332,260 - HMPREF1058_RS11625 0.32 -0.8 332,303 + HMPREF1058_RS11625 0.35 -0.3 332,335 - HMPREF1058_RS11625 0.37 -1.2 332,339 + HMPREF1058_RS11625 0.37 -1.6 332,623 - HMPREF1058_RS11625 0.55 +0.8 332,760 + HMPREF1058_RS11625 0.63 -2.7 332,760 + HMPREF1058_RS11625 0.63 -0.5 332,784 + HMPREF1058_RS11625 0.65 -2.7 332,787 - HMPREF1058_RS11625 0.65 -1.9 332,913 + HMPREF1058_RS11625 0.73 -1.0 332,916 + HMPREF1058_RS11625 0.73 -1.5 332,917 - HMPREF1058_RS11625 0.73 -2.0 332,935 + HMPREF1058_RS11625 0.74 -0.4 332,952 + HMPREF1058_RS11625 0.75 -1.4 333,054 + HMPREF1058_RS11625 0.82 -2.5 333,061 + HMPREF1058_RS11625 0.82 -1.4 333,133 - HMPREF1058_RS11625 0.87 -1.4 333,206 - -0.1 333,246 + -1.5 333,333 + +0.3 333,333 + -1.2 333,334 - -1.0 333,336 + -3.4 333,336 + -1.2 333,336 + -1.3 333,338 + -1.3 333,339 - -0.5 333,339 - -0.9
Or see this region's nucleotide sequence