Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11010 and HMPREF1058_RS11005 are separated by 4 nucleotides HMPREF1058_RS11005 and HMPREF1058_RS11000 overlap by 25 nucleotides HMPREF1058_RS11000 and HMPREF1058_RS10995 are separated by 18 nucleotides
HMPREF1058_RS11010: HMPREF1058_RS11010 - tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD, at 504,025 to 504,708
_RS11010
HMPREF1058_RS11005: HMPREF1058_RS11005 - DedA family protein, at 504,713 to 505,180
_RS11005
HMPREF1058_RS11000: HMPREF1058_RS11000 - hypothetical protein, at 505,156 to 506,091
_RS11000
HMPREF1058_RS10995: HMPREF1058_RS10995 - phosphoribosylamine--glycine ligase, at 506,110 to 507,378
_RS10995
Position (kb) 505
506
507 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 504.177 kb on - strand, within HMPREF1058_RS11010 at 504.177 kb on - strand, within HMPREF1058_RS11010 at 504.242 kb on + strand, within HMPREF1058_RS11010 at 504.254 kb on + strand, within HMPREF1058_RS11010 at 504.254 kb on + strand, within HMPREF1058_RS11010 at 504.325 kb on + strand, within HMPREF1058_RS11010 at 504.326 kb on - strand, within HMPREF1058_RS11010 at 504.326 kb on - strand, within HMPREF1058_RS11010 at 504.475 kb on - strand, within HMPREF1058_RS11010 at 504.477 kb on - strand, within HMPREF1058_RS11010 at 504.541 kb on + strand, within HMPREF1058_RS11010 at 504.668 kb on + strand at 504.668 kb on + strand at 504.669 kb on - strand at 504.669 kb on - strand at 504.669 kb on - strand at 504.675 kb on + strand at 504.676 kb on - strand at 504.676 kb on - strand at 504.677 kb on + strand at 504.678 kb on - strand at 504.678 kb on - strand at 504.806 kb on + strand, within HMPREF1058_RS11005 at 504.808 kb on + strand, within HMPREF1058_RS11005 at 504.808 kb on + strand, within HMPREF1058_RS11005 at 504.808 kb on + strand, within HMPREF1058_RS11005 at 504.808 kb on + strand, within HMPREF1058_RS11005 at 504.809 kb on - strand, within HMPREF1058_RS11005 at 504.830 kb on + strand, within HMPREF1058_RS11005 at 504.839 kb on + strand, within HMPREF1058_RS11005 at 504.945 kb on + strand, within HMPREF1058_RS11005 at 505.034 kb on - strand, within HMPREF1058_RS11005 at 505.117 kb on + strand, within HMPREF1058_RS11005 at 505.188 kb on - strand at 505.191 kb on + strand at 505.201 kb on + strand at 505.207 kb on + strand at 505.288 kb on + strand, within HMPREF1058_RS11000 at 505.288 kb on + strand, within HMPREF1058_RS11000 at 505.289 kb on - strand, within HMPREF1058_RS11000 at 505.387 kb on + strand, within HMPREF1058_RS11000 at 505.399 kb on + strand, within HMPREF1058_RS11000 at 505.408 kb on + strand, within HMPREF1058_RS11000 at 505.596 kb on - strand, within HMPREF1058_RS11000 at 505.689 kb on - strand, within HMPREF1058_RS11000 at 505.746 kb on + strand, within HMPREF1058_RS11000 at 505.772 kb on + strand, within HMPREF1058_RS11000 at 505.773 kb on - strand, within HMPREF1058_RS11000 at 505.875 kb on - strand, within HMPREF1058_RS11000 at 505.894 kb on - strand, within HMPREF1058_RS11000 at 505.894 kb on - strand, within HMPREF1058_RS11000 at 506.020 kb on + strand at 506.020 kb on + strand at 506.020 kb on + strand at 506.020 kb on + strand at 506.020 kb on + strand at 506.020 kb on + strand at 506.021 kb on - strand at 506.021 kb on - strand at 506.022 kb on + strand at 506.022 kb on + strand at 506.023 kb on - strand at 506.065 kb on + strand at 506.066 kb on - strand at 506.287 kb on + strand, within HMPREF1058_RS10995 at 506.287 kb on + strand, within HMPREF1058_RS10995 at 506.378 kb on - strand, within HMPREF1058_RS10995 at 506.395 kb on + strand, within HMPREF1058_RS10995 at 506.395 kb on + strand, within HMPREF1058_RS10995 at 506.395 kb on + strand, within HMPREF1058_RS10995 at 506.396 kb on - strand, within HMPREF1058_RS10995 at 506.506 kb on + strand, within HMPREF1058_RS10995 at 506.545 kb on - strand, within HMPREF1058_RS10995 at 506.572 kb on - strand, within HMPREF1058_RS10995 at 506.574 kb on - strand, within HMPREF1058_RS10995 at 506.671 kb on + strand, within HMPREF1058_RS10995 at 506.671 kb on + strand, within HMPREF1058_RS10995 at 506.671 kb on + strand, within HMPREF1058_RS10995 at 506.726 kb on + strand, within HMPREF1058_RS10995 at 506.791 kb on + strand, within HMPREF1058_RS10995 at 506.942 kb on + strand, within HMPREF1058_RS10995 at 506.942 kb on + strand, within HMPREF1058_RS10995 at 506.943 kb on - strand at 506.943 kb on - strand, within HMPREF1058_RS10995
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 504,177 - HMPREF1058_RS11010 0.22 -0.7 504,177 - HMPREF1058_RS11010 0.22 -0.9 504,242 + HMPREF1058_RS11010 0.32 +0.8 504,254 + HMPREF1058_RS11010 0.33 -0.1 504,254 + HMPREF1058_RS11010 0.33 -1.1 504,325 + HMPREF1058_RS11010 0.44 -0.1 504,326 - HMPREF1058_RS11010 0.44 +0.4 504,326 - HMPREF1058_RS11010 0.44 +0.8 504,475 - HMPREF1058_RS11010 0.66 +0.6 504,477 - HMPREF1058_RS11010 0.66 +1.3 504,541 + HMPREF1058_RS11010 0.75 +0.2 504,668 + +1.0 504,668 + +0.5 504,669 - -1.2 504,669 - -0.2 504,669 - +0.8 504,675 + +0.5 504,676 - +0.9 504,676 - -0.3 504,677 + -1.1 504,678 - -1.1 504,678 - +0.3 504,806 + HMPREF1058_RS11005 0.20 +0.8 504,808 + HMPREF1058_RS11005 0.20 -0.1 504,808 + HMPREF1058_RS11005 0.20 -0.4 504,808 + HMPREF1058_RS11005 0.20 -0.5 504,808 + HMPREF1058_RS11005 0.20 +0.0 504,809 - HMPREF1058_RS11005 0.21 -0.5 504,830 + HMPREF1058_RS11005 0.25 -2.2 504,839 + HMPREF1058_RS11005 0.27 -1.2 504,945 + HMPREF1058_RS11005 0.50 +0.3 505,034 - HMPREF1058_RS11005 0.69 -0.4 505,117 + HMPREF1058_RS11005 0.86 -0.3 505,188 - +1.6 505,191 + +0.3 505,201 + +0.1 505,207 + -1.1 505,288 + HMPREF1058_RS11000 0.14 -0.9 505,288 + HMPREF1058_RS11000 0.14 +0.5 505,289 - HMPREF1058_RS11000 0.14 -1.6 505,387 + HMPREF1058_RS11000 0.25 +2.4 505,399 + HMPREF1058_RS11000 0.26 -1.0 505,408 + HMPREF1058_RS11000 0.27 -0.1 505,596 - HMPREF1058_RS11000 0.47 -1.9 505,689 - HMPREF1058_RS11000 0.57 -1.5 505,746 + HMPREF1058_RS11000 0.63 -2.7 505,772 + HMPREF1058_RS11000 0.66 -2.0 505,773 - HMPREF1058_RS11000 0.66 -0.2 505,875 - HMPREF1058_RS11000 0.77 +1.4 505,894 - HMPREF1058_RS11000 0.79 -0.2 505,894 - HMPREF1058_RS11000 0.79 -0.2 506,020 + +0.1 506,020 + -1.6 506,020 + -0.4 506,020 + -0.5 506,020 + -1.2 506,020 + -1.3 506,021 - -0.7 506,021 - +0.3 506,022 + -1.8 506,022 + -0.3 506,023 - -0.9 506,065 + -1.9 506,066 - +0.7 506,287 + HMPREF1058_RS10995 0.14 -1.3 506,287 + HMPREF1058_RS10995 0.14 -1.9 506,378 - HMPREF1058_RS10995 0.21 -2.8 506,395 + HMPREF1058_RS10995 0.22 -2.3 506,395 + HMPREF1058_RS10995 0.22 -2.4 506,395 + HMPREF1058_RS10995 0.22 -2.0 506,396 - HMPREF1058_RS10995 0.23 -3.5 506,506 + HMPREF1058_RS10995 0.31 -1.5 506,545 - HMPREF1058_RS10995 0.34 -2.8 506,572 - HMPREF1058_RS10995 0.36 -0.2 506,574 - HMPREF1058_RS10995 0.37 -1.3 506,671 + HMPREF1058_RS10995 0.44 -3.7 506,671 + HMPREF1058_RS10995 0.44 -1.4 506,671 + HMPREF1058_RS10995 0.44 -0.7 506,726 + HMPREF1058_RS10995 0.49 -2.3 506,791 + HMPREF1058_RS10995 0.54 -2.2 506,942 + HMPREF1058_RS10995 0.66 -1.1 506,942 + HMPREF1058_RS10995 0.66 -0.8 506,943 - +0.0 506,943 - HMPREF1058_RS10995 0.66 -2.4
Or see this region's nucleotide sequence