Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10995

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS11005 and HMPREF1058_RS11000 overlap by 25 nucleotidesHMPREF1058_RS11000 and HMPREF1058_RS10995 are separated by 18 nucleotidesHMPREF1058_RS10995 and HMPREF1058_RS10990 are separated by 15 nucleotides HMPREF1058_RS11005: HMPREF1058_RS11005 - DedA family protein, at 504,713 to 505,180 _RS11005 HMPREF1058_RS11000: HMPREF1058_RS11000 - hypothetical protein, at 505,156 to 506,091 _RS11000 HMPREF1058_RS10995: HMPREF1058_RS10995 - phosphoribosylamine--glycine ligase, at 506,110 to 507,378 _RS10995 HMPREF1058_RS10990: HMPREF1058_RS10990 - S9 family peptidase, at 507,394 to 509,607 _RS10990 Position (kb) 506 507 508Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 505.117 kb on + strand, within HMPREF1058_RS11005at 505.188 kb on - strandat 505.191 kb on + strandat 505.201 kb on + strandat 505.207 kb on + strandat 505.288 kb on + strand, within HMPREF1058_RS11000at 505.288 kb on + strand, within HMPREF1058_RS11000at 505.289 kb on - strand, within HMPREF1058_RS11000at 505.387 kb on + strand, within HMPREF1058_RS11000at 505.399 kb on + strand, within HMPREF1058_RS11000at 505.408 kb on + strand, within HMPREF1058_RS11000at 505.596 kb on - strand, within HMPREF1058_RS11000at 505.689 kb on - strand, within HMPREF1058_RS11000at 505.746 kb on + strand, within HMPREF1058_RS11000at 505.772 kb on + strand, within HMPREF1058_RS11000at 505.773 kb on - strand, within HMPREF1058_RS11000at 505.875 kb on - strand, within HMPREF1058_RS11000at 505.894 kb on - strand, within HMPREF1058_RS11000at 505.894 kb on - strand, within HMPREF1058_RS11000at 506.020 kb on + strandat 506.020 kb on + strandat 506.020 kb on + strandat 506.020 kb on + strandat 506.020 kb on + strandat 506.020 kb on + strandat 506.021 kb on - strandat 506.021 kb on - strandat 506.022 kb on + strandat 506.022 kb on + strandat 506.023 kb on - strandat 506.065 kb on + strandat 506.066 kb on - strandat 506.287 kb on + strand, within HMPREF1058_RS10995at 506.287 kb on + strand, within HMPREF1058_RS10995at 506.378 kb on - strand, within HMPREF1058_RS10995at 506.395 kb on + strand, within HMPREF1058_RS10995at 506.395 kb on + strand, within HMPREF1058_RS10995at 506.395 kb on + strand, within HMPREF1058_RS10995at 506.396 kb on - strand, within HMPREF1058_RS10995at 506.506 kb on + strand, within HMPREF1058_RS10995at 506.545 kb on - strand, within HMPREF1058_RS10995at 506.572 kb on - strand, within HMPREF1058_RS10995at 506.574 kb on - strand, within HMPREF1058_RS10995at 506.671 kb on + strand, within HMPREF1058_RS10995at 506.671 kb on + strand, within HMPREF1058_RS10995at 506.671 kb on + strand, within HMPREF1058_RS10995at 506.726 kb on + strand, within HMPREF1058_RS10995at 506.791 kb on + strand, within HMPREF1058_RS10995at 506.942 kb on + strand, within HMPREF1058_RS10995at 506.942 kb on + strand, within HMPREF1058_RS10995at 506.943 kb on - strandat 506.943 kb on - strand, within HMPREF1058_RS10995at 507.143 kb on + strand, within HMPREF1058_RS10995at 507.143 kb on + strand, within HMPREF1058_RS10995at 507.190 kb on + strand, within HMPREF1058_RS10995at 507.190 kb on + strand, within HMPREF1058_RS10995at 507.190 kb on + strand, within HMPREF1058_RS10995at 507.191 kb on - strand, within HMPREF1058_RS10995at 507.191 kb on - strand, within HMPREF1058_RS10995at 507.205 kb on + strand, within HMPREF1058_RS10995at 507.206 kb on - strand, within HMPREF1058_RS10995at 507.226 kb on - strand, within HMPREF1058_RS10995at 507.259 kb on + strandat 507.264 kb on + strandat 507.265 kb on - strandat 507.265 kb on - strandat 507.364 kb on + strandat 507.462 kb on + strandat 507.466 kb on - strandat 507.482 kb on + strandat 507.668 kb on + strand, within HMPREF1058_RS10990at 507.680 kb on + strand, within HMPREF1058_RS10990at 507.686 kb on - strand, within HMPREF1058_RS10990at 507.686 kb on - strand, within HMPREF1058_RS10990at 507.686 kb on - strand, within HMPREF1058_RS10990at 507.693 kb on - strand, within HMPREF1058_RS10990at 507.695 kb on + strand, within HMPREF1058_RS10990at 507.696 kb on - strand, within HMPREF1058_RS10990at 507.725 kb on - strand, within HMPREF1058_RS10990at 507.800 kb on - strand, within HMPREF1058_RS10990at 507.898 kb on - strand, within HMPREF1058_RS10990at 507.959 kb on + strand, within HMPREF1058_RS10990at 507.978 kb on - strand, within HMPREF1058_RS10990at 507.982 kb on - strand, within HMPREF1058_RS10990at 508.001 kb on + strand, within HMPREF1058_RS10990at 508.002 kb on - strand, within HMPREF1058_RS10990at 508.050 kb on - strand, within HMPREF1058_RS10990at 508.109 kb on + strand, within HMPREF1058_RS10990at 508.110 kb on - strand, within HMPREF1058_RS10990at 508.110 kb on - strand, within HMPREF1058_RS10990at 508.112 kb on - strand, within HMPREF1058_RS10990at 508.112 kb on - strand, within HMPREF1058_RS10990at 508.165 kb on - strand, within HMPREF1058_RS10990at 508.169 kb on + strand, within HMPREF1058_RS10990at 508.169 kb on + strand, within HMPREF1058_RS10990at 508.206 kb on + strand, within HMPREF1058_RS10990at 508.266 kb on + strand, within HMPREF1058_RS10990at 508.269 kb on - strand, within HMPREF1058_RS10990at 508.269 kb on - strand, within HMPREF1058_RS10990at 508.283 kb on + strand, within HMPREF1058_RS10990at 508.283 kb on + strand, within HMPREF1058_RS10990at 508.306 kb on + strand, within HMPREF1058_RS10990at 508.306 kb on + strand, within HMPREF1058_RS10990at 508.307 kb on - strand, within HMPREF1058_RS10990at 508.370 kb on + strand, within HMPREF1058_RS10990

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
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505,117 + HMPREF1058_RS11005 0.86 -0.3
505,188 - +1.6
505,191 + +0.3
505,201 + +0.1
505,207 + -1.1
505,288 + HMPREF1058_RS11000 0.14 -0.9
505,288 + HMPREF1058_RS11000 0.14 +0.5
505,289 - HMPREF1058_RS11000 0.14 -1.6
505,387 + HMPREF1058_RS11000 0.25 +2.4
505,399 + HMPREF1058_RS11000 0.26 -1.0
505,408 + HMPREF1058_RS11000 0.27 -0.1
505,596 - HMPREF1058_RS11000 0.47 -1.9
505,689 - HMPREF1058_RS11000 0.57 -1.5
505,746 + HMPREF1058_RS11000 0.63 -2.7
505,772 + HMPREF1058_RS11000 0.66 -2.0
505,773 - HMPREF1058_RS11000 0.66 -0.2
505,875 - HMPREF1058_RS11000 0.77 +1.4
505,894 - HMPREF1058_RS11000 0.79 -0.2
505,894 - HMPREF1058_RS11000 0.79 -0.2
506,020 + +0.1
506,020 + -1.6
506,020 + -0.4
506,020 + -0.5
506,020 + -1.2
506,020 + -1.3
506,021 - -0.7
506,021 - +0.3
506,022 + -1.8
506,022 + -0.3
506,023 - -0.9
506,065 + -1.9
506,066 - +0.7
506,287 + HMPREF1058_RS10995 0.14 -1.3
506,287 + HMPREF1058_RS10995 0.14 -1.9
506,378 - HMPREF1058_RS10995 0.21 -2.8
506,395 + HMPREF1058_RS10995 0.22 -2.3
506,395 + HMPREF1058_RS10995 0.22 -2.4
506,395 + HMPREF1058_RS10995 0.22 -2.0
506,396 - HMPREF1058_RS10995 0.23 -3.5
506,506 + HMPREF1058_RS10995 0.31 -1.5
506,545 - HMPREF1058_RS10995 0.34 -2.8
506,572 - HMPREF1058_RS10995 0.36 -0.2
506,574 - HMPREF1058_RS10995 0.37 -1.3
506,671 + HMPREF1058_RS10995 0.44 -3.7
506,671 + HMPREF1058_RS10995 0.44 -1.4
506,671 + HMPREF1058_RS10995 0.44 -0.7
506,726 + HMPREF1058_RS10995 0.49 -2.3
506,791 + HMPREF1058_RS10995 0.54 -2.2
506,942 + HMPREF1058_RS10995 0.66 -1.1
506,942 + HMPREF1058_RS10995 0.66 -0.8
506,943 - +0.0
506,943 - HMPREF1058_RS10995 0.66 -2.4
507,143 + HMPREF1058_RS10995 0.81 -1.4
507,143 + HMPREF1058_RS10995 0.81 -2.3
507,190 + HMPREF1058_RS10995 0.85 -2.6
507,190 + HMPREF1058_RS10995 0.85 -3.0
507,190 + HMPREF1058_RS10995 0.85 +3.0
507,191 - HMPREF1058_RS10995 0.85 -1.8
507,191 - HMPREF1058_RS10995 0.85 -4.0
507,205 + HMPREF1058_RS10995 0.86 -2.0
507,206 - HMPREF1058_RS10995 0.86 -1.5
507,226 - HMPREF1058_RS10995 0.88 -2.1
507,259 + -2.2
507,264 + -2.5
507,265 - -2.2
507,265 - -3.6
507,364 + +0.0
507,462 + -0.2
507,466 - -0.2
507,482 + -2.4
507,668 + HMPREF1058_RS10990 0.12 -1.2
507,680 + HMPREF1058_RS10990 0.13 +0.4
507,686 - HMPREF1058_RS10990 0.13 -1.1
507,686 - HMPREF1058_RS10990 0.13 +1.4
507,686 - HMPREF1058_RS10990 0.13 +0.8
507,693 - HMPREF1058_RS10990 0.14 -1.0
507,695 + HMPREF1058_RS10990 0.14 -1.6
507,696 - HMPREF1058_RS10990 0.14 -2.2
507,725 - HMPREF1058_RS10990 0.15 -0.5
507,800 - HMPREF1058_RS10990 0.18 -0.1
507,898 - HMPREF1058_RS10990 0.23 +1.0
507,959 + HMPREF1058_RS10990 0.26 -0.2
507,978 - HMPREF1058_RS10990 0.26 -0.6
507,982 - HMPREF1058_RS10990 0.27 +0.1
508,001 + HMPREF1058_RS10990 0.27 -2.6
508,002 - HMPREF1058_RS10990 0.27 +0.1
508,050 - HMPREF1058_RS10990 0.30 -0.3
508,109 + HMPREF1058_RS10990 0.32 -1.0
508,110 - HMPREF1058_RS10990 0.32 -0.5
508,110 - HMPREF1058_RS10990 0.32 +0.0
508,112 - HMPREF1058_RS10990 0.32 +0.0
508,112 - HMPREF1058_RS10990 0.32 -0.2
508,165 - HMPREF1058_RS10990 0.35 +1.4
508,169 + HMPREF1058_RS10990 0.35 -2.4
508,169 + HMPREF1058_RS10990 0.35 +0.1
508,206 + HMPREF1058_RS10990 0.37 -2.4
508,266 + HMPREF1058_RS10990 0.39 -0.2
508,269 - HMPREF1058_RS10990 0.40 +0.5
508,269 - HMPREF1058_RS10990 0.40 +1.1
508,283 + HMPREF1058_RS10990 0.40 -2.3
508,283 + HMPREF1058_RS10990 0.40 -1.8
508,306 + HMPREF1058_RS10990 0.41 +0.8
508,306 + HMPREF1058_RS10990 0.41 -1.2
508,307 - HMPREF1058_RS10990 0.41 +0.4
508,370 + HMPREF1058_RS10990 0.44 -2.7

Or see this region's nucleotide sequence