Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10915 and HMPREF1058_RS10910 are separated by 76 nucleotides HMPREF1058_RS10910 and HMPREF1058_RS10905 are separated by 86 nucleotides HMPREF1058_RS10905 and HMPREF1058_RS10900 are separated by 36 nucleotides
HMPREF1058_RS10915: HMPREF1058_RS10915 - alkaline phosphatase family protein, at 529,870 to 531,696
_RS10915
HMPREF1058_RS10910: HMPREF1058_RS10910 - glycosyltransferase family 39 protein, at 531,773 to 533,497
_RS10910
HMPREF1058_RS10905: HMPREF1058_RS10905 - GtrA family protein, at 533,584 to 533,958
_RS10905
HMPREF1058_RS10900: HMPREF1058_RS10900 - glycosyltransferase, at 533,995 to 534,942
_RS10900
Position (kb) 531
532
533
534 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 530.797 kb on - strand, within HMPREF1058_RS10915 at 530.904 kb on - strand, within HMPREF1058_RS10915 at 531.088 kb on + strand, within HMPREF1058_RS10915 at 531.095 kb on - strand, within HMPREF1058_RS10915 at 531.154 kb on - strand at 531.220 kb on + strand, within HMPREF1058_RS10915 at 531.222 kb on + strand, within HMPREF1058_RS10915 at 531.222 kb on + strand, within HMPREF1058_RS10915 at 531.222 kb on + strand, within HMPREF1058_RS10915 at 531.223 kb on - strand, within HMPREF1058_RS10915 at 531.223 kb on - strand, within HMPREF1058_RS10915 at 531.223 kb on - strand, within HMPREF1058_RS10915 at 531.316 kb on + strand, within HMPREF1058_RS10915 at 531.317 kb on - strand, within HMPREF1058_RS10915 at 531.360 kb on + strand, within HMPREF1058_RS10915 at 531.472 kb on - strand, within HMPREF1058_RS10915 at 531.480 kb on + strand, within HMPREF1058_RS10915 at 531.481 kb on - strand, within HMPREF1058_RS10915 at 531.513 kb on + strand, within HMPREF1058_RS10915 at 531.513 kb on + strand, within HMPREF1058_RS10915 at 531.513 kb on + strand, within HMPREF1058_RS10915 at 531.514 kb on - strand at 531.532 kb on + strand at 531.532 kb on + strand at 531.534 kb on + strand at 531.731 kb on + strand at 531.732 kb on - strand at 531.734 kb on - strand at 531.770 kb on + strand at 531.770 kb on + strand at 531.770 kb on + strand at 531.771 kb on - strand at 531.799 kb on - strand at 531.835 kb on - strand at 531.864 kb on + strand at 531.865 kb on - strand at 531.914 kb on + strand at 531.921 kb on + strand at 531.921 kb on + strand at 531.970 kb on + strand, within HMPREF1058_RS10910 at 531.970 kb on + strand, within HMPREF1058_RS10910 at 531.987 kb on + strand, within HMPREF1058_RS10910 at 532.009 kb on + strand, within HMPREF1058_RS10910 at 532.010 kb on - strand, within HMPREF1058_RS10910 at 532.011 kb on + strand, within HMPREF1058_RS10910 at 532.012 kb on - strand, within HMPREF1058_RS10910 at 532.017 kb on + strand, within HMPREF1058_RS10910 at 532.077 kb on - strand, within HMPREF1058_RS10910 at 532.082 kb on + strand, within HMPREF1058_RS10910 at 532.086 kb on - strand, within HMPREF1058_RS10910 at 532.101 kb on - strand, within HMPREF1058_RS10910 at 532.101 kb on - strand, within HMPREF1058_RS10910 at 532.101 kb on - strand, within HMPREF1058_RS10910 at 532.195 kb on + strand, within HMPREF1058_RS10910 at 532.195 kb on + strand, within HMPREF1058_RS10910 at 532.196 kb on - strand, within HMPREF1058_RS10910 at 532.223 kb on + strand, within HMPREF1058_RS10910 at 532.313 kb on + strand, within HMPREF1058_RS10910 at 532.341 kb on - strand, within HMPREF1058_RS10910 at 532.387 kb on + strand, within HMPREF1058_RS10910 at 532.390 kb on - strand, within HMPREF1058_RS10910 at 532.456 kb on + strand, within HMPREF1058_RS10910 at 532.462 kb on + strand, within HMPREF1058_RS10910 at 532.462 kb on + strand, within HMPREF1058_RS10910 at 532.463 kb on - strand, within HMPREF1058_RS10910 at 532.470 kb on + strand, within HMPREF1058_RS10910 at 532.474 kb on + strand, within HMPREF1058_RS10910 at 532.474 kb on + strand, within HMPREF1058_RS10910 at 532.515 kb on + strand, within HMPREF1058_RS10910 at 532.515 kb on + strand, within HMPREF1058_RS10910 at 532.516 kb on - strand, within HMPREF1058_RS10910 at 532.559 kb on + strand, within HMPREF1058_RS10910 at 532.705 kb on + strand, within HMPREF1058_RS10910 at 532.705 kb on + strand, within HMPREF1058_RS10910 at 532.705 kb on + strand, within HMPREF1058_RS10910 at 532.706 kb on - strand, within HMPREF1058_RS10910 at 532.706 kb on - strand, within HMPREF1058_RS10910 at 532.942 kb on + strand, within HMPREF1058_RS10910 at 532.943 kb on - strand, within HMPREF1058_RS10910 at 532.943 kb on - strand, within HMPREF1058_RS10910 at 532.955 kb on - strand, within HMPREF1058_RS10910 at 532.955 kb on - strand, within HMPREF1058_RS10910 at 533.176 kb on + strand, within HMPREF1058_RS10910 at 533.177 kb on - strand, within HMPREF1058_RS10910 at 533.217 kb on - strand, within HMPREF1058_RS10910 at 533.290 kb on + strand, within HMPREF1058_RS10910 at 533.413 kb on - strand at 533.444 kb on + strand at 533.445 kb on - strand at 533.445 kb on - strand at 533.515 kb on - strand at 533.517 kb on - strand at 533.549 kb on - strand at 533.625 kb on - strand at 533.631 kb on - strand, within HMPREF1058_RS10905 at 533.631 kb on - strand, within HMPREF1058_RS10905 at 533.699 kb on + strand, within HMPREF1058_RS10905 at 533.699 kb on + strand, within HMPREF1058_RS10905 at 533.700 kb on - strand, within HMPREF1058_RS10905 at 533.704 kb on + strand, within HMPREF1058_RS10905 at 533.705 kb on - strand, within HMPREF1058_RS10905 at 533.716 kb on + strand, within HMPREF1058_RS10905 at 533.756 kb on - strand, within HMPREF1058_RS10905 at 533.761 kb on - strand, within HMPREF1058_RS10905 at 533.825 kb on - strand, within HMPREF1058_RS10905 at 533.831 kb on + strand, within HMPREF1058_RS10905 at 533.956 kb on + strand at 534.026 kb on - strand at 534.026 kb on - strand at 534.139 kb on - strand, within HMPREF1058_RS10900 at 534.187 kb on + strand, within HMPREF1058_RS10900 at 534.188 kb on - strand, within HMPREF1058_RS10900 at 534.222 kb on - strand, within HMPREF1058_RS10900 at 534.337 kb on + strand, within HMPREF1058_RS10900 at 534.419 kb on + strand, within HMPREF1058_RS10900 at 534.444 kb on + strand, within HMPREF1058_RS10900 at 534.445 kb on - strand, within HMPREF1058_RS10900
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 530,797 - HMPREF1058_RS10915 0.51 -1.9 530,904 - HMPREF1058_RS10915 0.57 -0.4 531,088 + HMPREF1058_RS10915 0.67 -0.9 531,095 - HMPREF1058_RS10915 0.67 -0.8 531,154 - +1.2 531,220 + HMPREF1058_RS10915 0.74 -0.7 531,222 + HMPREF1058_RS10915 0.74 -1.6 531,222 + HMPREF1058_RS10915 0.74 -1.2 531,222 + HMPREF1058_RS10915 0.74 -0.9 531,223 - HMPREF1058_RS10915 0.74 -2.0 531,223 - HMPREF1058_RS10915 0.74 -0.3 531,223 - HMPREF1058_RS10915 0.74 -1.7 531,316 + HMPREF1058_RS10915 0.79 -1.6 531,317 - HMPREF1058_RS10915 0.79 -0.0 531,360 + HMPREF1058_RS10915 0.82 -0.3 531,472 - HMPREF1058_RS10915 0.88 +1.7 531,480 + HMPREF1058_RS10915 0.88 -1.5 531,481 - HMPREF1058_RS10915 0.88 -0.9 531,513 + HMPREF1058_RS10915 0.90 +1.2 531,513 + HMPREF1058_RS10915 0.90 -1.5 531,513 + HMPREF1058_RS10915 0.90 -0.3 531,514 - -0.3 531,532 + -1.9 531,532 + -4.6 531,534 + -0.9 531,731 + +1.1 531,732 - -0.1 531,734 - +1.3 531,770 + +0.7 531,770 + +0.3 531,770 + +0.5 531,771 - -0.2 531,799 - -1.6 531,835 - -0.3 531,864 + -1.2 531,865 - -1.1 531,914 + -1.0 531,921 + -1.5 531,921 + -2.8 531,970 + HMPREF1058_RS10910 0.11 -0.8 531,970 + HMPREF1058_RS10910 0.11 -1.6 531,987 + HMPREF1058_RS10910 0.12 -1.7 532,009 + HMPREF1058_RS10910 0.14 -2.1 532,010 - HMPREF1058_RS10910 0.14 -0.5 532,011 + HMPREF1058_RS10910 0.14 -2.0 532,012 - HMPREF1058_RS10910 0.14 -1.3 532,017 + HMPREF1058_RS10910 0.14 -2.2 532,077 - HMPREF1058_RS10910 0.18 -0.9 532,082 + HMPREF1058_RS10910 0.18 +0.3 532,086 - HMPREF1058_RS10910 0.18 -0.5 532,101 - HMPREF1058_RS10910 0.19 -0.5 532,101 - HMPREF1058_RS10910 0.19 -0.3 532,101 - HMPREF1058_RS10910 0.19 -2.2 532,195 + HMPREF1058_RS10910 0.24 -1.4 532,195 + HMPREF1058_RS10910 0.24 +2.4 532,196 - HMPREF1058_RS10910 0.25 -1.9 532,223 + HMPREF1058_RS10910 0.26 +1.4 532,313 + HMPREF1058_RS10910 0.31 -1.6 532,341 - HMPREF1058_RS10910 0.33 -0.8 532,387 + HMPREF1058_RS10910 0.36 -1.3 532,390 - HMPREF1058_RS10910 0.36 -1.1 532,456 + HMPREF1058_RS10910 0.40 -0.9 532,462 + HMPREF1058_RS10910 0.40 -1.8 532,462 + HMPREF1058_RS10910 0.40 -1.9 532,463 - HMPREF1058_RS10910 0.40 -1.8 532,470 + HMPREF1058_RS10910 0.40 -1.1 532,474 + HMPREF1058_RS10910 0.41 -3.0 532,474 + HMPREF1058_RS10910 0.41 -1.3 532,515 + HMPREF1058_RS10910 0.43 -1.6 532,515 + HMPREF1058_RS10910 0.43 -0.9 532,516 - HMPREF1058_RS10910 0.43 -1.6 532,559 + HMPREF1058_RS10910 0.46 -2.1 532,705 + HMPREF1058_RS10910 0.54 -1.0 532,705 + HMPREF1058_RS10910 0.54 -2.3 532,705 + HMPREF1058_RS10910 0.54 -2.2 532,706 - HMPREF1058_RS10910 0.54 -0.5 532,706 - HMPREF1058_RS10910 0.54 -2.6 532,942 + HMPREF1058_RS10910 0.68 -1.3 532,943 - HMPREF1058_RS10910 0.68 -2.8 532,943 - HMPREF1058_RS10910 0.68 -1.1 532,955 - HMPREF1058_RS10910 0.69 -1.6 532,955 - HMPREF1058_RS10910 0.69 -1.6 533,176 + HMPREF1058_RS10910 0.81 -0.3 533,177 - HMPREF1058_RS10910 0.81 -0.2 533,217 - HMPREF1058_RS10910 0.84 -2.4 533,290 + HMPREF1058_RS10910 0.88 -1.3 533,413 - -3.0 533,444 + -1.6 533,445 - -1.8 533,445 - -0.5 533,515 - +1.9 533,517 - -0.6 533,549 - +1.1 533,625 - -0.8 533,631 - HMPREF1058_RS10905 0.13 -2.8 533,631 - HMPREF1058_RS10905 0.13 -0.7 533,699 + HMPREF1058_RS10905 0.31 +1.0 533,699 + HMPREF1058_RS10905 0.31 -0.8 533,700 - HMPREF1058_RS10905 0.31 -0.4 533,704 + HMPREF1058_RS10905 0.32 +1.0 533,705 - HMPREF1058_RS10905 0.32 +0.1 533,716 + HMPREF1058_RS10905 0.35 +1.4 533,756 - HMPREF1058_RS10905 0.46 -1.5 533,761 - HMPREF1058_RS10905 0.47 +0.1 533,825 - HMPREF1058_RS10905 0.64 +0.0 533,831 + HMPREF1058_RS10905 0.66 +0.7 533,956 + +0.5 534,026 - -3.1 534,026 - -2.7 534,139 - HMPREF1058_RS10900 0.15 -2.7 534,187 + HMPREF1058_RS10900 0.20 -0.8 534,188 - HMPREF1058_RS10900 0.20 -2.1 534,222 - HMPREF1058_RS10900 0.24 -2.2 534,337 + HMPREF1058_RS10900 0.36 -1.5 534,419 + HMPREF1058_RS10900 0.45 -0.9 534,444 + HMPREF1058_RS10900 0.47 -0.2 534,445 - HMPREF1058_RS10900 0.47 -2.3
Or see this region's nucleotide sequence