Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10910 and HMPREF1058_RS10905 are separated by 86 nucleotides HMPREF1058_RS10905 and HMPREF1058_RS10900 are separated by 36 nucleotides HMPREF1058_RS10900 and HMPREF1058_RS10895 are separated by 30 nucleotides
HMPREF1058_RS10910: HMPREF1058_RS10910 - glycosyltransferase family 39 protein, at 531,773 to 533,497
_RS10910
HMPREF1058_RS10905: HMPREF1058_RS10905 - GtrA family protein, at 533,584 to 533,958
_RS10905
HMPREF1058_RS10900: HMPREF1058_RS10900 - glycosyltransferase, at 533,995 to 534,942
_RS10900
HMPREF1058_RS10895: HMPREF1058_RS10895 - LTA synthase family protein, at 534,973 to 537,000
_RS10895
Position (kb) 533
534
535 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 533.176 kb on + strand, within HMPREF1058_RS10910 at 533.177 kb on - strand, within HMPREF1058_RS10910 at 533.217 kb on - strand, within HMPREF1058_RS10910 at 533.290 kb on + strand, within HMPREF1058_RS10910 at 533.413 kb on - strand at 533.444 kb on + strand at 533.445 kb on - strand at 533.445 kb on - strand at 533.515 kb on - strand at 533.517 kb on - strand at 533.549 kb on - strand at 533.625 kb on - strand at 533.631 kb on - strand, within HMPREF1058_RS10905 at 533.631 kb on - strand, within HMPREF1058_RS10905 at 533.699 kb on + strand, within HMPREF1058_RS10905 at 533.699 kb on + strand, within HMPREF1058_RS10905 at 533.700 kb on - strand, within HMPREF1058_RS10905 at 533.704 kb on + strand, within HMPREF1058_RS10905 at 533.705 kb on - strand, within HMPREF1058_RS10905 at 533.716 kb on + strand, within HMPREF1058_RS10905 at 533.756 kb on - strand, within HMPREF1058_RS10905 at 533.761 kb on - strand, within HMPREF1058_RS10905 at 533.825 kb on - strand, within HMPREF1058_RS10905 at 533.831 kb on + strand, within HMPREF1058_RS10905 at 533.956 kb on + strand at 534.026 kb on - strand at 534.026 kb on - strand at 534.139 kb on - strand, within HMPREF1058_RS10900 at 534.187 kb on + strand, within HMPREF1058_RS10900 at 534.188 kb on - strand, within HMPREF1058_RS10900 at 534.222 kb on - strand, within HMPREF1058_RS10900 at 534.337 kb on + strand, within HMPREF1058_RS10900 at 534.419 kb on + strand, within HMPREF1058_RS10900 at 534.444 kb on + strand, within HMPREF1058_RS10900 at 534.445 kb on - strand, within HMPREF1058_RS10900 at 534.681 kb on + strand, within HMPREF1058_RS10900 at 534.723 kb on - strand, within HMPREF1058_RS10900 at 534.760 kb on + strand, within HMPREF1058_RS10900 at 534.813 kb on - strand, within HMPREF1058_RS10900 at 534.843 kb on + strand, within HMPREF1058_RS10900 at 534.844 kb on - strand at 534.853 kb on + strand at 534.854 kb on - strand at 534.892 kb on - strand at 534.895 kb on + strand at 534.896 kb on - strand at 534.899 kb on + strand at 534.900 kb on - strand at 534.910 kb on + strand at 534.913 kb on - strand at 535.013 kb on - strand at 535.019 kb on + strand at 535.049 kb on + strand at 535.064 kb on + strand at 535.065 kb on - strand at 535.065 kb on - strand at 535.116 kb on + strand at 535.116 kb on + strand at 535.119 kb on - strand at 535.148 kb on + strand at 535.149 kb on - strand at 535.152 kb on + strand at 535.152 kb on + strand at 535.152 kb on + strand at 535.153 kb on - strand at 535.153 kb on - strand at 535.154 kb on + strand at 535.157 kb on - strand at 535.157 kb on - strand at 535.167 kb on + strand at 535.209 kb on - strand, within HMPREF1058_RS10895 at 535.256 kb on + strand, within HMPREF1058_RS10895 at 535.257 kb on - strand, within HMPREF1058_RS10895 at 535.257 kb on - strand, within HMPREF1058_RS10895 at 535.370 kb on + strand, within HMPREF1058_RS10895 at 535.371 kb on - strand, within HMPREF1058_RS10895 at 535.555 kb on + strand, within HMPREF1058_RS10895 at 535.563 kb on - strand, within HMPREF1058_RS10895 at 535.647 kb on - strand, within HMPREF1058_RS10895 at 535.670 kb on - strand, within HMPREF1058_RS10895 at 535.720 kb on + strand, within HMPREF1058_RS10895 at 535.721 kb on - strand, within HMPREF1058_RS10895 at 535.816 kb on + strand, within HMPREF1058_RS10895 at 535.820 kb on - strand, within HMPREF1058_RS10895 at 535.907 kb on + strand, within HMPREF1058_RS10895 at 535.907 kb on + strand, within HMPREF1058_RS10895 at 535.908 kb on - strand, within HMPREF1058_RS10895 at 535.908 kb on - strand, within HMPREF1058_RS10895 at 535.923 kb on + strand, within HMPREF1058_RS10895 at 535.924 kb on - strand, within HMPREF1058_RS10895 at 535.924 kb on - strand, within HMPREF1058_RS10895 at 535.927 kb on + strand, within HMPREF1058_RS10895
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 533,176 + HMPREF1058_RS10910 0.81 -0.3 533,177 - HMPREF1058_RS10910 0.81 -0.2 533,217 - HMPREF1058_RS10910 0.84 -2.4 533,290 + HMPREF1058_RS10910 0.88 -1.3 533,413 - -3.0 533,444 + -1.6 533,445 - -1.8 533,445 - -0.5 533,515 - +1.9 533,517 - -0.6 533,549 - +1.1 533,625 - -0.8 533,631 - HMPREF1058_RS10905 0.13 -2.8 533,631 - HMPREF1058_RS10905 0.13 -0.7 533,699 + HMPREF1058_RS10905 0.31 +1.0 533,699 + HMPREF1058_RS10905 0.31 -0.8 533,700 - HMPREF1058_RS10905 0.31 -0.4 533,704 + HMPREF1058_RS10905 0.32 +1.0 533,705 - HMPREF1058_RS10905 0.32 +0.1 533,716 + HMPREF1058_RS10905 0.35 +1.4 533,756 - HMPREF1058_RS10905 0.46 -1.5 533,761 - HMPREF1058_RS10905 0.47 +0.1 533,825 - HMPREF1058_RS10905 0.64 +0.0 533,831 + HMPREF1058_RS10905 0.66 +0.7 533,956 + +0.5 534,026 - -3.1 534,026 - -2.7 534,139 - HMPREF1058_RS10900 0.15 -2.7 534,187 + HMPREF1058_RS10900 0.20 -0.8 534,188 - HMPREF1058_RS10900 0.20 -2.1 534,222 - HMPREF1058_RS10900 0.24 -2.2 534,337 + HMPREF1058_RS10900 0.36 -1.5 534,419 + HMPREF1058_RS10900 0.45 -0.9 534,444 + HMPREF1058_RS10900 0.47 -0.2 534,445 - HMPREF1058_RS10900 0.47 -2.3 534,681 + HMPREF1058_RS10900 0.72 -1.9 534,723 - HMPREF1058_RS10900 0.77 -1.2 534,760 + HMPREF1058_RS10900 0.81 +0.8 534,813 - HMPREF1058_RS10900 0.86 -2.6 534,843 + HMPREF1058_RS10900 0.89 -0.1 534,844 - +0.1 534,853 + +0.1 534,854 - -2.1 534,892 - -2.6 534,895 + -1.7 534,896 - -0.8 534,899 + -1.9 534,900 - +0.3 534,910 + -0.8 534,913 - -1.7 535,013 - -0.7 535,019 + -0.7 535,049 + -0.7 535,064 + +0.6 535,065 - -2.1 535,065 - -2.9 535,116 + -0.9 535,116 + -0.9 535,119 - -1.3 535,148 + -0.4 535,149 - -0.6 535,152 + -0.2 535,152 + -0.2 535,152 + -1.5 535,153 - -1.5 535,153 - -0.4 535,154 + -1.5 535,157 - -1.7 535,157 - -1.0 535,167 + +1.3 535,209 - HMPREF1058_RS10895 0.12 +0.1 535,256 + HMPREF1058_RS10895 0.14 -1.2 535,257 - HMPREF1058_RS10895 0.14 -0.3 535,257 - HMPREF1058_RS10895 0.14 -1.3 535,370 + HMPREF1058_RS10895 0.20 -1.3 535,371 - HMPREF1058_RS10895 0.20 -0.4 535,555 + HMPREF1058_RS10895 0.29 -2.1 535,563 - HMPREF1058_RS10895 0.29 -1.6 535,647 - HMPREF1058_RS10895 0.33 -1.6 535,670 - HMPREF1058_RS10895 0.34 -1.0 535,720 + HMPREF1058_RS10895 0.37 -0.9 535,721 - HMPREF1058_RS10895 0.37 -2.2 535,816 + HMPREF1058_RS10895 0.42 -0.0 535,820 - HMPREF1058_RS10895 0.42 -0.8 535,907 + HMPREF1058_RS10895 0.46 -1.3 535,907 + HMPREF1058_RS10895 0.46 -1.0 535,908 - HMPREF1058_RS10895 0.46 -0.1 535,908 - HMPREF1058_RS10895 0.46 -0.9 535,923 + HMPREF1058_RS10895 0.47 -2.4 535,924 - HMPREF1058_RS10895 0.47 -0.3 535,924 - HMPREF1058_RS10895 0.47 -0.5 535,927 + HMPREF1058_RS10895 0.47 -0.9
Or see this region's nucleotide sequence