Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10855 and HMPREF1058_RS10850 are separated by 227 nucleotides HMPREF1058_RS10850 and HMPREF1058_RS10845 are separated by 14 nucleotides HMPREF1058_RS10845 and HMPREF1058_RS10840 are separated by 15 nucleotides
HMPREF1058_RS10855: HMPREF1058_RS10855 - glycosyltransferase family 2 protein, at 547,491 to 548,396
_RS10855
HMPREF1058_RS10850: HMPREF1058_RS10850 - glycosyltransferase family 2 protein, at 548,624 to 549,523
_RS10850
HMPREF1058_RS10845: HMPREF1058_RS10845 - hypothetical protein, at 549,538 to 550,290
_RS10845
HMPREF1058_RS10840: HMPREF1058_RS10840 - hypothetical protein, at 550,306 to 551,022
_RS10840
Position (kb) 548
549
550 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 547.630 kb on + strand, within HMPREF1058_RS10855 at 547.630 kb on + strand, within HMPREF1058_RS10855 at 547.696 kb on - strand, within HMPREF1058_RS10855 at 547.729 kb on - strand, within HMPREF1058_RS10855 at 547.729 kb on - strand, within HMPREF1058_RS10855 at 547.731 kb on - strand, within HMPREF1058_RS10855 at 547.743 kb on + strand, within HMPREF1058_RS10855 at 547.743 kb on + strand, within HMPREF1058_RS10855 at 547.744 kb on - strand, within HMPREF1058_RS10855 at 547.744 kb on - strand, within HMPREF1058_RS10855 at 547.786 kb on - strand, within HMPREF1058_RS10855 at 547.908 kb on + strand, within HMPREF1058_RS10855 at 547.909 kb on - strand, within HMPREF1058_RS10855 at 547.916 kb on + strand, within HMPREF1058_RS10855 at 547.996 kb on + strand, within HMPREF1058_RS10855 at 547.997 kb on - strand, within HMPREF1058_RS10855 at 547.998 kb on + strand, within HMPREF1058_RS10855 at 547.999 kb on - strand, within HMPREF1058_RS10855 at 548.030 kb on - strand, within HMPREF1058_RS10855 at 548.073 kb on - strand, within HMPREF1058_RS10855 at 548.099 kb on + strand, within HMPREF1058_RS10855 at 548.125 kb on + strand, within HMPREF1058_RS10855 at 548.126 kb on - strand, within HMPREF1058_RS10855 at 548.146 kb on - strand, within HMPREF1058_RS10855 at 548.213 kb on + strand, within HMPREF1058_RS10855 at 548.214 kb on - strand, within HMPREF1058_RS10855 at 548.252 kb on + strand, within HMPREF1058_RS10855 at 548.360 kb on + strand at 548.361 kb on - strand at 548.361 kb on - strand at 548.361 kb on - strand at 548.370 kb on + strand at 548.385 kb on + strand at 548.386 kb on - strand at 548.401 kb on - strand at 548.430 kb on + strand at 548.434 kb on - strand at 548.443 kb on + strand at 548.484 kb on + strand at 548.486 kb on + strand at 548.486 kb on + strand at 548.486 kb on + strand at 548.487 kb on - strand at 548.499 kb on - strand at 548.532 kb on - strand at 548.565 kb on + strand at 548.566 kb on - strand at 548.571 kb on - strand at 548.571 kb on - strand at 548.574 kb on + strand at 548.651 kb on + strand at 548.652 kb on - strand at 548.686 kb on + strand at 548.741 kb on - strand, within HMPREF1058_RS10850 at 548.741 kb on - strand, within HMPREF1058_RS10850 at 548.783 kb on + strand, within HMPREF1058_RS10850 at 548.783 kb on + strand, within HMPREF1058_RS10850 at 548.807 kb on + strand, within HMPREF1058_RS10850 at 548.920 kb on + strand, within HMPREF1058_RS10850 at 548.921 kb on - strand, within HMPREF1058_RS10850 at 548.923 kb on - strand, within HMPREF1058_RS10850 at 548.968 kb on + strand, within HMPREF1058_RS10850 at 549.008 kb on + strand, within HMPREF1058_RS10850 at 549.008 kb on + strand, within HMPREF1058_RS10850 at 549.009 kb on - strand, within HMPREF1058_RS10850 at 549.108 kb on + strand, within HMPREF1058_RS10850 at 549.109 kb on - strand, within HMPREF1058_RS10850 at 549.161 kb on + strand, within HMPREF1058_RS10850 at 549.306 kb on + strand, within HMPREF1058_RS10850 at 549.311 kb on + strand, within HMPREF1058_RS10850 at 549.311 kb on + strand, within HMPREF1058_RS10850 at 549.312 kb on - strand, within HMPREF1058_RS10850 at 549.312 kb on - strand, within HMPREF1058_RS10850 at 549.312 kb on - strand, within HMPREF1058_RS10850 at 549.321 kb on + strand, within HMPREF1058_RS10850 at 549.321 kb on + strand, within HMPREF1058_RS10850 at 549.321 kb on + strand, within HMPREF1058_RS10850 at 549.322 kb on - strand, within HMPREF1058_RS10850 at 549.322 kb on - strand, within HMPREF1058_RS10850 at 549.322 kb on - strand, within HMPREF1058_RS10850 at 549.416 kb on - strand, within HMPREF1058_RS10850 at 549.420 kb on - strand, within HMPREF1058_RS10850 at 549.515 kb on - strand at 550.479 kb on - strand, within HMPREF1058_RS10840
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 547,630 + HMPREF1058_RS10855 0.15 -1.7 547,630 + HMPREF1058_RS10855 0.15 -1.6 547,696 - HMPREF1058_RS10855 0.23 -1.7 547,729 - HMPREF1058_RS10855 0.26 -0.3 547,729 - HMPREF1058_RS10855 0.26 -0.4 547,731 - HMPREF1058_RS10855 0.26 +1.6 547,743 + HMPREF1058_RS10855 0.28 -2.4 547,743 + HMPREF1058_RS10855 0.28 +0.9 547,744 - HMPREF1058_RS10855 0.28 -0.6 547,744 - HMPREF1058_RS10855 0.28 -1.5 547,786 - HMPREF1058_RS10855 0.33 -1.3 547,908 + HMPREF1058_RS10855 0.46 -2.6 547,909 - HMPREF1058_RS10855 0.46 +2.4 547,916 + HMPREF1058_RS10855 0.47 -0.8 547,996 + HMPREF1058_RS10855 0.56 -0.1 547,997 - HMPREF1058_RS10855 0.56 -0.5 547,998 + HMPREF1058_RS10855 0.56 -1.4 547,999 - HMPREF1058_RS10855 0.56 +5.4 548,030 - HMPREF1058_RS10855 0.59 -1.5 548,073 - HMPREF1058_RS10855 0.64 -0.7 548,099 + HMPREF1058_RS10855 0.67 -0.9 548,125 + HMPREF1058_RS10855 0.70 -0.5 548,126 - HMPREF1058_RS10855 0.70 -1.1 548,146 - HMPREF1058_RS10855 0.72 -0.5 548,213 + HMPREF1058_RS10855 0.80 -0.8 548,214 - HMPREF1058_RS10855 0.80 -0.9 548,252 + HMPREF1058_RS10855 0.84 -0.9 548,360 + -1.9 548,361 - -1.2 548,361 - -0.0 548,361 - -1.1 548,370 + -1.2 548,385 + +0.4 548,386 - -1.3 548,401 - -0.3 548,430 + -1.8 548,434 - +0.8 548,443 + -1.2 548,484 + +0.4 548,486 + -0.7 548,486 + -2.1 548,486 + -3.1 548,487 - +0.2 548,499 - -0.5 548,532 - +0.9 548,565 + -0.5 548,566 - +0.2 548,571 - -1.9 548,571 - +0.2 548,574 + +1.1 548,651 + -2.9 548,652 - -1.3 548,686 + -1.1 548,741 - HMPREF1058_RS10850 0.13 -1.7 548,741 - HMPREF1058_RS10850 0.13 -2.0 548,783 + HMPREF1058_RS10850 0.18 -1.3 548,783 + HMPREF1058_RS10850 0.18 -2.8 548,807 + HMPREF1058_RS10850 0.20 -2.8 548,920 + HMPREF1058_RS10850 0.33 -2.3 548,921 - HMPREF1058_RS10850 0.33 -2.3 548,923 - HMPREF1058_RS10850 0.33 +0.8 548,968 + HMPREF1058_RS10850 0.38 -2.4 549,008 + HMPREF1058_RS10850 0.43 -0.4 549,008 + HMPREF1058_RS10850 0.43 -1.3 549,009 - HMPREF1058_RS10850 0.43 -1.7 549,108 + HMPREF1058_RS10850 0.54 +0.4 549,109 - HMPREF1058_RS10850 0.54 -1.5 549,161 + HMPREF1058_RS10850 0.60 -1.5 549,306 + HMPREF1058_RS10850 0.76 -1.6 549,311 + HMPREF1058_RS10850 0.76 -0.8 549,311 + HMPREF1058_RS10850 0.76 -0.7 549,312 - HMPREF1058_RS10850 0.76 -1.1 549,312 - HMPREF1058_RS10850 0.76 -0.5 549,312 - HMPREF1058_RS10850 0.76 +1.8 549,321 + HMPREF1058_RS10850 0.77 -2.3 549,321 + HMPREF1058_RS10850 0.77 -0.7 549,321 + HMPREF1058_RS10850 0.77 -2.0 549,322 - HMPREF1058_RS10850 0.78 -0.5 549,322 - HMPREF1058_RS10850 0.78 -2.9 549,322 - HMPREF1058_RS10850 0.78 -1.1 549,416 - HMPREF1058_RS10850 0.88 -0.5 549,420 - HMPREF1058_RS10850 0.88 -0.6 549,515 - -4.1 550,479 - HMPREF1058_RS10840 0.24 -0.8
Or see this region's nucleotide sequence