Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10845 and HMPREF1058_RS10840 are separated by 15 nucleotides HMPREF1058_RS10840 and HMPREF1058_RS10835 are separated by 83 nucleotides HMPREF1058_RS10835 and HMPREF1058_RS10830 are separated by 2 nucleotides HMPREF1058_RS10830 and HMPREF1058_RS10825 are separated by 0 nucleotides
HMPREF1058_RS10845: HMPREF1058_RS10845 - hypothetical protein, at 549,538 to 550,290
_RS10845
HMPREF1058_RS10840: HMPREF1058_RS10840 - hypothetical protein, at 550,306 to 551,022
_RS10840
HMPREF1058_RS10835: HMPREF1058_RS10835 - UDP-galactopyranose mutase, at 551,106 to 552,212
_RS10835
HMPREF1058_RS10830: HMPREF1058_RS10830 - lysophospholipid acyltransferase family protein, at 552,215 to 553,138
_RS10830
HMPREF1058_RS10825: HMPREF1058_RS10825 - glycosyltransferase family 9 protein, at 553,139 to 554,170
_RS10825
Position (kb) 551
552
553 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 550.479 kb on - strand, within HMPREF1058_RS10840 at 550.692 kb on - strand, within HMPREF1058_RS10840 at 550.796 kb on - strand, within HMPREF1058_RS10840 at 550.800 kb on - strand, within HMPREF1058_RS10840 at 551.036 kb on - strand at 551.059 kb on - strand at 551.059 kb on - strand at 551.167 kb on + strand at 551.315 kb on - strand, within HMPREF1058_RS10835 at 551.322 kb on + strand at 551.377 kb on + strand, within HMPREF1058_RS10835 at 551.444 kb on + strand, within HMPREF1058_RS10835 at 551.444 kb on + strand, within HMPREF1058_RS10835 at 551.445 kb on - strand, within HMPREF1058_RS10835 at 551.505 kb on + strand, within HMPREF1058_RS10835 at 551.505 kb on + strand, within HMPREF1058_RS10835 at 551.566 kb on + strand, within HMPREF1058_RS10835 at 551.566 kb on + strand, within HMPREF1058_RS10835 at 551.859 kb on + strand, within HMPREF1058_RS10835 at 551.860 kb on - strand, within HMPREF1058_RS10835 at 552.000 kb on + strand, within HMPREF1058_RS10835 at 552.001 kb on - strand, within HMPREF1058_RS10835 at 552.005 kb on - strand, within HMPREF1058_RS10835 at 552.020 kb on + strand, within HMPREF1058_RS10835 at 552.050 kb on - strand, within HMPREF1058_RS10835 at 552.050 kb on - strand, within HMPREF1058_RS10835 at 552.053 kb on + strand, within HMPREF1058_RS10835 at 552.073 kb on - strand, within HMPREF1058_RS10835 at 552.074 kb on + strand, within HMPREF1058_RS10835 at 552.089 kb on + strand, within HMPREF1058_RS10835 at 552.186 kb on + strand at 552.187 kb on - strand at 552.196 kb on + strand at 553.167 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 550,479 - HMPREF1058_RS10840 0.24 -0.8 550,692 - HMPREF1058_RS10840 0.54 -0.9 550,796 - HMPREF1058_RS10840 0.68 -1.9 550,800 - HMPREF1058_RS10840 0.69 -1.2 551,036 - +1.0 551,059 - +0.8 551,059 - -0.7 551,167 + -0.2 551,315 - HMPREF1058_RS10835 0.19 -1.0 551,322 + -0.8 551,377 + HMPREF1058_RS10835 0.24 -1.6 551,444 + HMPREF1058_RS10835 0.31 -1.8 551,444 + HMPREF1058_RS10835 0.31 -1.9 551,445 - HMPREF1058_RS10835 0.31 -0.3 551,505 + HMPREF1058_RS10835 0.36 -2.8 551,505 + HMPREF1058_RS10835 0.36 -1.8 551,566 + HMPREF1058_RS10835 0.42 +0.4 551,566 + HMPREF1058_RS10835 0.42 -1.9 551,859 + HMPREF1058_RS10835 0.68 -1.4 551,860 - HMPREF1058_RS10835 0.68 -2.4 552,000 + HMPREF1058_RS10835 0.81 -0.4 552,001 - HMPREF1058_RS10835 0.81 -0.7 552,005 - HMPREF1058_RS10835 0.81 -2.6 552,020 + HMPREF1058_RS10835 0.83 +0.1 552,050 - HMPREF1058_RS10835 0.85 -0.6 552,050 - HMPREF1058_RS10835 0.85 -1.5 552,053 + HMPREF1058_RS10835 0.86 -0.2 552,073 - HMPREF1058_RS10835 0.87 -0.7 552,074 + HMPREF1058_RS10835 0.87 +1.8 552,089 + HMPREF1058_RS10835 0.89 -1.2 552,186 + -0.4 552,187 - -2.9 552,196 + +1.6 553,167 - +1.0
Or see this region's nucleotide sequence