Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10725 and HMPREF1058_RS10720 are separated by 147 nucleotides HMPREF1058_RS10720 and HMPREF1058_RS10715 are separated by 4 nucleotides
HMPREF1058_RS10725: HMPREF1058_RS10725 - 6-phosphofructokinase, at 585,660 to 586,670
_RS10725
HMPREF1058_RS10720: HMPREF1058_RS10720 - GH3 auxin-responsive promoter family protein, at 586,818 to 588,323
_RS10720
HMPREF1058_RS10715: HMPREF1058_RS10715 - Ig-like domain-containing protein, at 588,328 to 590,250
_RS10715
Position (kb) 586
587
588
589 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 585.887 kb on + strand, within HMPREF1058_RS10725 at 585.889 kb on + strand, within HMPREF1058_RS10725 at 585.947 kb on + strand, within HMPREF1058_RS10725 at 585.947 kb on + strand, within HMPREF1058_RS10725 at 585.947 kb on + strand, within HMPREF1058_RS10725 at 585.947 kb on + strand, within HMPREF1058_RS10725 at 586.051 kb on - strand, within HMPREF1058_RS10725 at 586.052 kb on + strand, within HMPREF1058_RS10725 at 586.052 kb on + strand, within HMPREF1058_RS10725 at 586.055 kb on + strand, within HMPREF1058_RS10725 at 586.056 kb on - strand, within HMPREF1058_RS10725 at 586.140 kb on - strand, within HMPREF1058_RS10725 at 586.283 kb on + strand, within HMPREF1058_RS10725 at 586.359 kb on + strand, within HMPREF1058_RS10725 at 586.359 kb on + strand, within HMPREF1058_RS10725 at 586.359 kb on + strand, within HMPREF1058_RS10725 at 586.683 kb on + strand at 586.727 kb on + strand at 586.753 kb on - strand at 586.762 kb on + strand at 586.762 kb on + strand at 586.764 kb on + strand at 586.764 kb on + strand at 586.764 kb on + strand at 586.765 kb on - strand at 586.770 kb on - strand at 586.793 kb on + strand at 586.827 kb on - strand at 586.834 kb on + strand at 586.963 kb on - strand at 586.978 kb on + strand, within HMPREF1058_RS10720 at 586.979 kb on - strand, within HMPREF1058_RS10720 at 587.005 kb on + strand, within HMPREF1058_RS10720 at 587.009 kb on + strand at 587.037 kb on + strand, within HMPREF1058_RS10720 at 587.037 kb on + strand, within HMPREF1058_RS10720 at 587.038 kb on - strand at 587.041 kb on + strand, within HMPREF1058_RS10720 at 587.120 kb on + strand, within HMPREF1058_RS10720 at 587.280 kb on + strand, within HMPREF1058_RS10720 at 587.281 kb on - strand, within HMPREF1058_RS10720 at 587.302 kb on + strand, within HMPREF1058_RS10720 at 587.493 kb on - strand, within HMPREF1058_RS10720 at 587.493 kb on - strand, within HMPREF1058_RS10720 at 587.603 kb on + strand, within HMPREF1058_RS10720 at 587.628 kb on - strand, within HMPREF1058_RS10720 at 587.637 kb on + strand, within HMPREF1058_RS10720 at 587.721 kb on + strand, within HMPREF1058_RS10720 at 587.766 kb on - strand, within HMPREF1058_RS10720 at 587.819 kb on + strand at 587.841 kb on + strand, within HMPREF1058_RS10720 at 587.842 kb on - strand, within HMPREF1058_RS10720 at 587.843 kb on + strand, within HMPREF1058_RS10720 at 587.895 kb on - strand, within HMPREF1058_RS10720 at 587.897 kb on - strand, within HMPREF1058_RS10720 at 588.081 kb on - strand, within HMPREF1058_RS10720 at 588.291 kb on + strand at 588.291 kb on + strand at 588.293 kb on + strand at 588.293 kb on + strand at 588.293 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 585,887 + HMPREF1058_RS10725 0.22 -0.5 585,889 + HMPREF1058_RS10725 0.23 -0.8 585,947 + HMPREF1058_RS10725 0.28 +1.1 585,947 + HMPREF1058_RS10725 0.28 -0.1 585,947 + HMPREF1058_RS10725 0.28 -1.9 585,947 + HMPREF1058_RS10725 0.28 -0.6 586,051 - HMPREF1058_RS10725 0.39 -0.2 586,052 + HMPREF1058_RS10725 0.39 -0.4 586,052 + HMPREF1058_RS10725 0.39 -1.7 586,055 + HMPREF1058_RS10725 0.39 +0.2 586,056 - HMPREF1058_RS10725 0.39 +1.4 586,140 - HMPREF1058_RS10725 0.47 -0.6 586,283 + HMPREF1058_RS10725 0.62 -1.1 586,359 + HMPREF1058_RS10725 0.69 -0.7 586,359 + HMPREF1058_RS10725 0.69 -0.7 586,359 + HMPREF1058_RS10725 0.69 -3.4 586,683 + +0.3 586,727 + +1.5 586,753 - -2.2 586,762 + -0.5 586,762 + -0.5 586,764 + -0.6 586,764 + +0.3 586,764 + +0.3 586,765 - -1.2 586,770 - -1.9 586,793 + +0.2 586,827 - -0.2 586,834 + -1.0 586,963 - -1.6 586,978 + HMPREF1058_RS10720 0.11 -1.6 586,979 - HMPREF1058_RS10720 0.11 -3.0 587,005 + HMPREF1058_RS10720 0.12 -1.5 587,009 + +0.4 587,037 + HMPREF1058_RS10720 0.15 -1.1 587,037 + HMPREF1058_RS10720 0.15 -0.4 587,038 - +0.4 587,041 + HMPREF1058_RS10720 0.15 -1.2 587,120 + HMPREF1058_RS10720 0.20 -3.1 587,280 + HMPREF1058_RS10720 0.31 -0.2 587,281 - HMPREF1058_RS10720 0.31 -1.1 587,302 + HMPREF1058_RS10720 0.32 -1.6 587,493 - HMPREF1058_RS10720 0.45 -1.3 587,493 - HMPREF1058_RS10720 0.45 -2.3 587,603 + HMPREF1058_RS10720 0.52 +2.4 587,628 - HMPREF1058_RS10720 0.54 +1.4 587,637 + HMPREF1058_RS10720 0.54 -1.0 587,721 + HMPREF1058_RS10720 0.60 -2.4 587,766 - HMPREF1058_RS10720 0.63 -1.7 587,819 + +1.4 587,841 + HMPREF1058_RS10720 0.68 -0.4 587,842 - HMPREF1058_RS10720 0.68 -1.1 587,843 + HMPREF1058_RS10720 0.68 +0.8 587,895 - HMPREF1058_RS10720 0.72 +0.1 587,897 - HMPREF1058_RS10720 0.72 +0.4 588,081 - HMPREF1058_RS10720 0.84 -2.4 588,291 + +0.4 588,291 + -1.5 588,293 + -0.6 588,293 + -0.4 588,293 + -3.4
Or see this region's nucleotide sequence