Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10715 and HMPREF1058_RS10710 overlap by 4 nucleotides HMPREF1058_RS10710 and HMPREF1058_RS10705 are separated by 88 nucleotides
HMPREF1058_RS10715: HMPREF1058_RS10715 - Ig-like domain-containing protein, at 588,328 to 590,250
_RS10715
HMPREF1058_RS10710: HMPREF1058_RS10710 - DUF3108 domain-containing protein, at 590,247 to 591,056
_RS10710
HMPREF1058_RS10705: HMPREF1058_RS10705 - hypothetical protein, at 591,145 to 591,966
_RS10705
Position (kb) 590
591
592 Strain fitness (log2 ratio) -2
-1
0
1
2 at 590.150 kb on + strand at 590.151 kb on - strand at 590.214 kb on + strand at 590.215 kb on - strand at 590.258 kb on + strand at 590.269 kb on + strand at 590.350 kb on + strand, within HMPREF1058_RS10710 at 590.426 kb on + strand, within HMPREF1058_RS10710 at 590.427 kb on - strand, within HMPREF1058_RS10710 at 590.427 kb on - strand, within HMPREF1058_RS10710 at 590.427 kb on - strand, within HMPREF1058_RS10710 at 590.427 kb on - strand, within HMPREF1058_RS10710 at 590.431 kb on - strand, within HMPREF1058_RS10710 at 590.453 kb on + strand, within HMPREF1058_RS10710 at 590.456 kb on + strand, within HMPREF1058_RS10710 at 590.510 kb on + strand, within HMPREF1058_RS10710 at 590.523 kb on - strand, within HMPREF1058_RS10710 at 590.599 kb on + strand, within HMPREF1058_RS10710 at 590.599 kb on + strand, within HMPREF1058_RS10710 at 590.612 kb on + strand, within HMPREF1058_RS10710 at 590.645 kb on + strand, within HMPREF1058_RS10710 at 590.696 kb on + strand, within HMPREF1058_RS10710 at 590.706 kb on - strand, within HMPREF1058_RS10710 at 590.716 kb on + strand, within HMPREF1058_RS10710 at 590.743 kb on + strand, within HMPREF1058_RS10710 at 590.743 kb on + strand, within HMPREF1058_RS10710 at 590.820 kb on + strand, within HMPREF1058_RS10710 at 590.917 kb on + strand, within HMPREF1058_RS10710 at 590.917 kb on + strand, within HMPREF1058_RS10710 at 590.918 kb on - strand, within HMPREF1058_RS10710 at 590.918 kb on - strand, within HMPREF1058_RS10710 at 590.973 kb on + strand, within HMPREF1058_RS10710 at 591.034 kb on + strand at 591.046 kb on + strand at 591.072 kb on + strand at 591.072 kb on + strand at 591.072 kb on + strand at 591.072 kb on + strand at 591.073 kb on - strand at 591.073 kb on - strand at 591.123 kb on + strand at 591.124 kb on - strand at 591.141 kb on + strand at 591.142 kb on - strand at 591.147 kb on - strand at 591.202 kb on + strand at 591.203 kb on - strand at 591.281 kb on - strand, within HMPREF1058_RS10705 at 591.281 kb on - strand, within HMPREF1058_RS10705 at 591.304 kb on - strand, within HMPREF1058_RS10705 at 591.306 kb on + strand, within HMPREF1058_RS10705 at 591.306 kb on + strand, within HMPREF1058_RS10705 at 591.306 kb on + strand, within HMPREF1058_RS10705 at 591.307 kb on - strand, within HMPREF1058_RS10705 at 591.334 kb on + strand, within HMPREF1058_RS10705 at 591.346 kb on + strand, within HMPREF1058_RS10705 at 591.347 kb on - strand, within HMPREF1058_RS10705 at 591.347 kb on - strand, within HMPREF1058_RS10705 at 591.384 kb on + strand, within HMPREF1058_RS10705 at 591.387 kb on - strand, within HMPREF1058_RS10705 at 591.387 kb on - strand, within HMPREF1058_RS10705 at 591.387 kb on - strand, within HMPREF1058_RS10705 at 591.415 kb on - strand, within HMPREF1058_RS10705 at 591.441 kb on - strand, within HMPREF1058_RS10705 at 591.443 kb on - strand, within HMPREF1058_RS10705 at 591.443 kb on - strand, within HMPREF1058_RS10705 at 591.514 kb on - strand, within HMPREF1058_RS10705 at 591.515 kb on + strand, within HMPREF1058_RS10705 at 591.516 kb on - strand, within HMPREF1058_RS10705 at 591.573 kb on + strand at 591.577 kb on + strand, within HMPREF1058_RS10705 at 591.578 kb on - strand, within HMPREF1058_RS10705 at 591.599 kb on - strand, within HMPREF1058_RS10705 at 591.628 kb on - strand, within HMPREF1058_RS10705 at 591.713 kb on + strand, within HMPREF1058_RS10705 at 591.920 kb on - strand at 591.949 kb on + strand at 591.950 kb on - strand at 591.957 kb on + strand at 591.958 kb on - strand at 591.991 kb on + strand at 591.996 kb on + strand at 591.997 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 590,150 + +0.8 590,151 - -1.5 590,214 + -0.6 590,215 - +0.8 590,258 + -1.1 590,269 + -1.3 590,350 + HMPREF1058_RS10710 0.13 -2.5 590,426 + HMPREF1058_RS10710 0.22 -0.4 590,427 - HMPREF1058_RS10710 0.22 -1.5 590,427 - HMPREF1058_RS10710 0.22 -2.0 590,427 - HMPREF1058_RS10710 0.22 -1.3 590,427 - HMPREF1058_RS10710 0.22 -1.9 590,431 - HMPREF1058_RS10710 0.23 -1.9 590,453 + HMPREF1058_RS10710 0.25 -1.2 590,456 + HMPREF1058_RS10710 0.26 -1.3 590,510 + HMPREF1058_RS10710 0.32 -2.0 590,523 - HMPREF1058_RS10710 0.34 -0.6 590,599 + HMPREF1058_RS10710 0.43 +1.2 590,599 + HMPREF1058_RS10710 0.43 -2.4 590,612 + HMPREF1058_RS10710 0.45 -0.5 590,645 + HMPREF1058_RS10710 0.49 -1.1 590,696 + HMPREF1058_RS10710 0.55 -2.2 590,706 - HMPREF1058_RS10710 0.57 -1.1 590,716 + HMPREF1058_RS10710 0.58 -0.2 590,743 + HMPREF1058_RS10710 0.61 -1.2 590,743 + HMPREF1058_RS10710 0.61 -0.7 590,820 + HMPREF1058_RS10710 0.71 -0.5 590,917 + HMPREF1058_RS10710 0.83 -0.9 590,917 + HMPREF1058_RS10710 0.83 +0.2 590,918 - HMPREF1058_RS10710 0.83 -0.8 590,918 - HMPREF1058_RS10710 0.83 -2.0 590,973 + HMPREF1058_RS10710 0.90 +0.1 591,034 + +0.3 591,046 + +0.3 591,072 + +0.4 591,072 + -0.5 591,072 + -2.5 591,072 + -0.6 591,073 - +1.4 591,073 - -0.5 591,123 + +0.1 591,124 - +0.5 591,141 + +1.0 591,142 - +1.1 591,147 - -0.9 591,202 + +0.7 591,203 - +0.1 591,281 - HMPREF1058_RS10705 0.17 +2.4 591,281 - HMPREF1058_RS10705 0.17 -1.5 591,304 - HMPREF1058_RS10705 0.19 -0.9 591,306 + HMPREF1058_RS10705 0.20 -0.4 591,306 + HMPREF1058_RS10705 0.20 +0.4 591,306 + HMPREF1058_RS10705 0.20 +0.6 591,307 - HMPREF1058_RS10705 0.20 +0.4 591,334 + HMPREF1058_RS10705 0.23 +1.1 591,346 + HMPREF1058_RS10705 0.24 +0.3 591,347 - HMPREF1058_RS10705 0.25 -0.7 591,347 - HMPREF1058_RS10705 0.25 -0.8 591,384 + HMPREF1058_RS10705 0.29 -0.4 591,387 - HMPREF1058_RS10705 0.29 -0.4 591,387 - HMPREF1058_RS10705 0.29 -0.6 591,387 - HMPREF1058_RS10705 0.29 -0.5 591,415 - HMPREF1058_RS10705 0.33 +0.2 591,441 - HMPREF1058_RS10705 0.36 -0.2 591,443 - HMPREF1058_RS10705 0.36 -0.8 591,443 - HMPREF1058_RS10705 0.36 +0.9 591,514 - HMPREF1058_RS10705 0.45 +0.1 591,515 + HMPREF1058_RS10705 0.45 -0.0 591,516 - HMPREF1058_RS10705 0.45 -0.1 591,573 + -0.8 591,577 + HMPREF1058_RS10705 0.53 +0.1 591,578 - HMPREF1058_RS10705 0.53 -0.4 591,599 - HMPREF1058_RS10705 0.55 +0.8 591,628 - HMPREF1058_RS10705 0.59 -2.1 591,713 + HMPREF1058_RS10705 0.69 +0.3 591,920 - -0.1 591,949 + -0.2 591,950 - +0.2 591,957 + -0.1 591,958 - -1.2 591,991 + -0.2 591,996 + +0.8 591,997 - -0.2
Or see this region's nucleotide sequence