Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10270

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS10275 and HMPREF1058_RS10270 are separated by 25 nucleotidesHMPREF1058_RS10270 and HMPREF1058_RS10265 overlap by 4 nucleotidesHMPREF1058_RS10265 and HMPREF1058_RS10260 are separated by 2 nucleotidesHMPREF1058_RS10260 and HMPREF1058_RS10255 are separated by 1 nucleotides HMPREF1058_RS10275: HMPREF1058_RS10275 - RNA-splicing ligase RtcB, at 696,212 to 697,399 _RS10275 HMPREF1058_RS10270: HMPREF1058_RS10270 - hypothetical protein, at 697,425 to 697,676 _RS10270 HMPREF1058_RS10265: HMPREF1058_RS10265 - hypothetical protein, at 697,673 to 697,891 _RS10265 HMPREF1058_RS10260: HMPREF1058_RS10260 - ADP-ribosylglycohydrolase family protein, at 697,894 to 698,658 _RS10260 HMPREF1058_RS10255: HMPREF1058_RS10255 - hypothetical protein, at 698,660 to 698,980 _RS10255 Position (kb) 697 698Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 696.449 kb on - strand, within HMPREF1058_RS10275at 696.473 kb on - strand, within HMPREF1058_RS10275at 696.527 kb on - strand, within HMPREF1058_RS10275at 696.529 kb on + strand, within HMPREF1058_RS10275at 696.531 kb on + strand, within HMPREF1058_RS10275at 696.531 kb on + strand, within HMPREF1058_RS10275at 696.532 kb on - strand, within HMPREF1058_RS10275at 696.532 kb on - strand, within HMPREF1058_RS10275at 696.532 kb on - strand, within HMPREF1058_RS10275at 696.570 kb on + strand, within HMPREF1058_RS10275at 696.571 kb on - strand, within HMPREF1058_RS10275at 696.594 kb on + strand, within HMPREF1058_RS10275at 696.605 kb on + strand, within HMPREF1058_RS10275at 696.605 kb on + strand, within HMPREF1058_RS10275at 696.606 kb on - strand, within HMPREF1058_RS10275at 696.673 kb on + strand, within HMPREF1058_RS10275at 696.677 kb on + strand, within HMPREF1058_RS10275at 696.677 kb on + strand, within HMPREF1058_RS10275at 696.678 kb on - strand, within HMPREF1058_RS10275at 696.680 kb on + strand, within HMPREF1058_RS10275at 696.703 kb on + strand, within HMPREF1058_RS10275at 696.755 kb on - strand, within HMPREF1058_RS10275at 696.908 kb on + strand, within HMPREF1058_RS10275at 696.909 kb on - strand, within HMPREF1058_RS10275at 696.911 kb on - strand, within HMPREF1058_RS10275at 696.958 kb on + strand, within HMPREF1058_RS10275at 696.959 kb on - strand, within HMPREF1058_RS10275at 696.959 kb on - strand, within HMPREF1058_RS10275at 696.994 kb on + strand, within HMPREF1058_RS10275at 697.028 kb on + strand, within HMPREF1058_RS10275at 697.029 kb on - strand, within HMPREF1058_RS10275at 697.093 kb on - strand, within HMPREF1058_RS10275at 697.095 kb on + strand, within HMPREF1058_RS10275at 697.102 kb on + strand, within HMPREF1058_RS10275at 697.196 kb on - strand, within HMPREF1058_RS10275at 697.284 kb on + strandat 697.304 kb on + strandat 697.374 kb on + strandat 697.376 kb on + strandat 697.378 kb on + strandat 697.433 kb on - strandat 697.451 kb on - strand, within HMPREF1058_RS10270at 697.538 kb on - strand, within HMPREF1058_RS10270at 697.538 kb on - strand, within HMPREF1058_RS10270at 697.599 kb on + strand, within HMPREF1058_RS10270at 697.600 kb on - strandat 697.604 kb on + strand, within HMPREF1058_RS10270at 697.604 kb on + strand, within HMPREF1058_RS10270at 697.724 kb on + strand, within HMPREF1058_RS10265at 697.785 kb on + strand, within HMPREF1058_RS10265at 697.898 kb on + strandat 697.910 kb on + strandat 697.911 kb on - strandat 697.923 kb on - strandat 698.001 kb on + strand, within HMPREF1058_RS10260at 698.002 kb on - strand, within HMPREF1058_RS10260at 698.139 kb on + strand, within HMPREF1058_RS10260at 698.153 kb on - strand, within HMPREF1058_RS10260at 698.154 kb on + strand, within HMPREF1058_RS10260at 698.157 kb on + strand, within HMPREF1058_RS10260at 698.221 kb on - strand, within HMPREF1058_RS10260at 698.279 kb on + strand, within HMPREF1058_RS10260at 698.365 kb on + strand, within HMPREF1058_RS10260at 698.365 kb on + strand, within HMPREF1058_RS10260at 698.373 kb on + strand, within HMPREF1058_RS10260at 698.373 kb on + strand, within HMPREF1058_RS10260at 698.374 kb on - strand, within HMPREF1058_RS10260at 698.374 kb on - strand, within HMPREF1058_RS10260at 698.374 kb on - strand, within HMPREF1058_RS10260at 698.395 kb on + strand, within HMPREF1058_RS10260at 698.436 kb on + strand, within HMPREF1058_RS10260at 698.451 kb on + strand, within HMPREF1058_RS10260at 698.451 kb on + strand, within HMPREF1058_RS10260at 698.517 kb on + strand, within HMPREF1058_RS10260at 698.529 kb on + strand, within HMPREF1058_RS10260at 698.530 kb on - strand, within HMPREF1058_RS10260at 698.541 kb on + strand, within HMPREF1058_RS10260at 698.541 kb on + strand, within HMPREF1058_RS10260at 698.542 kb on - strand, within HMPREF1058_RS10260at 698.553 kb on + strand, within HMPREF1058_RS10260at 698.611 kb on - strandat 698.624 kb on + strandat 698.635 kb on + strandat 698.641 kb on - strandat 698.652 kb on + strandat 698.652 kb on + strandat 698.656 kb on + strandat 698.656 kb on + strandat 698.669 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
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696,449 - HMPREF1058_RS10275 0.20 -0.6
696,473 - HMPREF1058_RS10275 0.22 -2.4
696,527 - HMPREF1058_RS10275 0.27 +0.4
696,529 + HMPREF1058_RS10275 0.27 -2.0
696,531 + HMPREF1058_RS10275 0.27 -1.6
696,531 + HMPREF1058_RS10275 0.27 -3.4
696,532 - HMPREF1058_RS10275 0.27 +0.4
696,532 - HMPREF1058_RS10275 0.27 -2.1
696,532 - HMPREF1058_RS10275 0.27 +1.8
696,570 + HMPREF1058_RS10275 0.30 +0.5
696,571 - HMPREF1058_RS10275 0.30 -0.2
696,594 + HMPREF1058_RS10275 0.32 -0.4
696,605 + HMPREF1058_RS10275 0.33 +1.1
696,605 + HMPREF1058_RS10275 0.33 -1.2
696,606 - HMPREF1058_RS10275 0.33 -1.7
696,673 + HMPREF1058_RS10275 0.39 -1.9
696,677 + HMPREF1058_RS10275 0.39 -1.8
696,677 + HMPREF1058_RS10275 0.39 +1.0
696,678 - HMPREF1058_RS10275 0.39 +0.3
696,680 + HMPREF1058_RS10275 0.39 -1.0
696,703 + HMPREF1058_RS10275 0.41 -1.2
696,755 - HMPREF1058_RS10275 0.46 +0.8
696,908 + HMPREF1058_RS10275 0.59 -4.0
696,909 - HMPREF1058_RS10275 0.59 -0.6
696,911 - HMPREF1058_RS10275 0.59 -0.1
696,958 + HMPREF1058_RS10275 0.63 -2.6
696,959 - HMPREF1058_RS10275 0.63 -0.8
696,959 - HMPREF1058_RS10275 0.63 -0.4
696,994 + HMPREF1058_RS10275 0.66 -2.2
697,028 + HMPREF1058_RS10275 0.69 -1.4
697,029 - HMPREF1058_RS10275 0.69 -1.8
697,093 - HMPREF1058_RS10275 0.74 +2.4
697,095 + HMPREF1058_RS10275 0.74 -1.3
697,102 + HMPREF1058_RS10275 0.75 +0.8
697,196 - HMPREF1058_RS10275 0.83 +0.1
697,284 + -0.8
697,304 + -1.9
697,374 + -0.4
697,376 + +0.8
697,378 + -4.0
697,433 - +0.2
697,451 - HMPREF1058_RS10270 0.10 -0.6
697,538 - HMPREF1058_RS10270 0.45 +0.2
697,538 - HMPREF1058_RS10270 0.45 -0.1
697,599 + HMPREF1058_RS10270 0.69 -1.8
697,600 - -0.8
697,604 + HMPREF1058_RS10270 0.71 -1.8
697,604 + HMPREF1058_RS10270 0.71 -1.5
697,724 + HMPREF1058_RS10265 0.23 -1.8
697,785 + HMPREF1058_RS10265 0.51 -1.6
697,898 + -0.8
697,910 + -1.3
697,911 - -1.8
697,923 - -0.4
698,001 + HMPREF1058_RS10260 0.14 -0.6
698,002 - HMPREF1058_RS10260 0.14 -0.5
698,139 + HMPREF1058_RS10260 0.32 -0.6
698,153 - HMPREF1058_RS10260 0.34 -0.9
698,154 + HMPREF1058_RS10260 0.34 -0.2
698,157 + HMPREF1058_RS10260 0.34 -0.8
698,221 - HMPREF1058_RS10260 0.43 -2.8
698,279 + HMPREF1058_RS10260 0.50 -2.0
698,365 + HMPREF1058_RS10260 0.62 +1.0
698,365 + HMPREF1058_RS10260 0.62 +0.4
698,373 + HMPREF1058_RS10260 0.63 -0.4
698,373 + HMPREF1058_RS10260 0.63 -0.9
698,374 - HMPREF1058_RS10260 0.63 -0.2
698,374 - HMPREF1058_RS10260 0.63 -0.7
698,374 - HMPREF1058_RS10260 0.63 -0.4
698,395 + HMPREF1058_RS10260 0.65 +0.4
698,436 + HMPREF1058_RS10260 0.71 -1.2
698,451 + HMPREF1058_RS10260 0.73 -0.3
698,451 + HMPREF1058_RS10260 0.73 -1.8
698,517 + HMPREF1058_RS10260 0.81 +0.4
698,529 + HMPREF1058_RS10260 0.83 -0.1
698,530 - HMPREF1058_RS10260 0.83 -1.4
698,541 + HMPREF1058_RS10260 0.85 -1.8
698,541 + HMPREF1058_RS10260 0.85 -1.1
698,542 - HMPREF1058_RS10260 0.85 -0.6
698,553 + HMPREF1058_RS10260 0.86 +0.0
698,611 - -1.3
698,624 + -1.1
698,635 + -0.5
698,641 - -1.8
698,652 + -0.9
698,652 + -0.5
698,656 + +0.2
698,656 + -1.5
698,669 - -1.5

Or see this region's nucleotide sequence