Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10270 and HMPREF1058_RS10265 overlap by 4 nucleotides HMPREF1058_RS10265 and HMPREF1058_RS10260 are separated by 2 nucleotides HMPREF1058_RS10260 and HMPREF1058_RS10255 are separated by 1 nucleotides HMPREF1058_RS10255 and HMPREF1058_RS10250 are separated by 324 nucleotides HMPREF1058_RS10250 and HMPREF1058_RS10245 are separated by 75 nucleotides
HMPREF1058_RS10270: HMPREF1058_RS10270 - hypothetical protein, at 697,425 to 697,676
_RS10270
HMPREF1058_RS10265: HMPREF1058_RS10265 - hypothetical protein, at 697,673 to 697,891
_RS10265
HMPREF1058_RS10260: HMPREF1058_RS10260 - ADP-ribosylglycohydrolase family protein, at 697,894 to 698,658
_RS10260
HMPREF1058_RS10255: HMPREF1058_RS10255 - hypothetical protein, at 698,660 to 698,980
_RS10255
HMPREF1058_RS10250: HMPREF1058_RS10250 - hypothetical protein, at 699,305 to 699,862
_RS10250
HMPREF1058_RS10245: HMPREF1058_RS10245 - hypothetical protein, at 699,938 to 702,400
_RS10245
Position (kb) 698
699 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 697.724 kb on + strand, within HMPREF1058_RS10265 at 697.785 kb on + strand, within HMPREF1058_RS10265 at 697.898 kb on + strand at 697.910 kb on + strand at 697.911 kb on - strand at 697.923 kb on - strand at 698.001 kb on + strand, within HMPREF1058_RS10260 at 698.002 kb on - strand, within HMPREF1058_RS10260 at 698.139 kb on + strand, within HMPREF1058_RS10260 at 698.153 kb on - strand, within HMPREF1058_RS10260 at 698.154 kb on + strand, within HMPREF1058_RS10260 at 698.157 kb on + strand, within HMPREF1058_RS10260 at 698.221 kb on - strand, within HMPREF1058_RS10260 at 698.279 kb on + strand, within HMPREF1058_RS10260 at 698.365 kb on + strand, within HMPREF1058_RS10260 at 698.365 kb on + strand, within HMPREF1058_RS10260 at 698.373 kb on + strand, within HMPREF1058_RS10260 at 698.373 kb on + strand, within HMPREF1058_RS10260 at 698.374 kb on - strand, within HMPREF1058_RS10260 at 698.374 kb on - strand, within HMPREF1058_RS10260 at 698.374 kb on - strand, within HMPREF1058_RS10260 at 698.395 kb on + strand, within HMPREF1058_RS10260 at 698.436 kb on + strand, within HMPREF1058_RS10260 at 698.451 kb on + strand, within HMPREF1058_RS10260 at 698.451 kb on + strand, within HMPREF1058_RS10260 at 698.517 kb on + strand, within HMPREF1058_RS10260 at 698.529 kb on + strand, within HMPREF1058_RS10260 at 698.530 kb on - strand, within HMPREF1058_RS10260 at 698.541 kb on + strand, within HMPREF1058_RS10260 at 698.541 kb on + strand, within HMPREF1058_RS10260 at 698.542 kb on - strand, within HMPREF1058_RS10260 at 698.553 kb on + strand, within HMPREF1058_RS10260 at 698.611 kb on - strand at 698.624 kb on + strand at 698.635 kb on + strand at 698.641 kb on - strand at 698.652 kb on + strand at 698.652 kb on + strand at 698.656 kb on + strand at 698.656 kb on + strand at 698.669 kb on - strand at 698.764 kb on + strand, within HMPREF1058_RS10255 at 698.822 kb on + strand, within HMPREF1058_RS10255 at 698.864 kb on + strand, within HMPREF1058_RS10255 at 698.864 kb on + strand, within HMPREF1058_RS10255 at 698.865 kb on - strand, within HMPREF1058_RS10255 at 698.890 kb on - strand, within HMPREF1058_RS10255 at 698.978 kb on + strand at 698.978 kb on + strand at 698.979 kb on - strand at 699.015 kb on + strand at 699.041 kb on - strand at 699.044 kb on + strand at 699.045 kb on - strand at 699.052 kb on + strand at 699.053 kb on - strand at 699.084 kb on - strand at 699.085 kb on + strand at 699.086 kb on - strand at 699.155 kb on + strand at 699.259 kb on - strand at 699.282 kb on + strand at 699.293 kb on - strand at 699.305 kb on - strand at 699.316 kb on - strand at 699.371 kb on + strand, within HMPREF1058_RS10250 at 699.372 kb on + strand, within HMPREF1058_RS10250 at 699.372 kb on - strand, within HMPREF1058_RS10250 at 699.396 kb on + strand, within HMPREF1058_RS10250 at 699.435 kb on - strand, within HMPREF1058_RS10250 at 699.451 kb on + strand, within HMPREF1058_RS10250 at 699.452 kb on - strand, within HMPREF1058_RS10250 at 699.454 kb on + strand, within HMPREF1058_RS10250 at 699.455 kb on - strand, within HMPREF1058_RS10250 at 699.455 kb on - strand, within HMPREF1058_RS10250 at 699.514 kb on + strand, within HMPREF1058_RS10250 at 699.514 kb on + strand, within HMPREF1058_RS10250 at 699.515 kb on - strand, within HMPREF1058_RS10250 at 699.517 kb on + strand, within HMPREF1058_RS10250 at 699.517 kb on + strand, within HMPREF1058_RS10250 at 699.566 kb on - strand, within HMPREF1058_RS10250 at 699.566 kb on - strand, within HMPREF1058_RS10250 at 699.567 kb on + strand, within HMPREF1058_RS10250 at 699.567 kb on + strand, within HMPREF1058_RS10250 at 699.568 kb on - strand, within HMPREF1058_RS10250 at 699.568 kb on - strand, within HMPREF1058_RS10250 at 699.569 kb on + strand, within HMPREF1058_RS10250 at 699.570 kb on - strand, within HMPREF1058_RS10250 at 699.570 kb on - strand, within HMPREF1058_RS10250 at 699.570 kb on - strand, within HMPREF1058_RS10250 at 699.570 kb on - strand, within HMPREF1058_RS10250 at 699.571 kb on + strand, within HMPREF1058_RS10250 at 699.582 kb on + strand, within HMPREF1058_RS10250 at 699.631 kb on - strand, within HMPREF1058_RS10250 at 699.662 kb on - strand, within HMPREF1058_RS10250 at 699.669 kb on + strand, within HMPREF1058_RS10250 at 699.682 kb on - strand, within HMPREF1058_RS10250 at 699.689 kb on + strand, within HMPREF1058_RS10250 at 699.690 kb on - strand, within HMPREF1058_RS10250 at 699.722 kb on + strand, within HMPREF1058_RS10250 at 699.746 kb on + strand, within HMPREF1058_RS10250 at 699.779 kb on + strand, within HMPREF1058_RS10250 at 699.780 kb on - strand, within HMPREF1058_RS10250 at 699.781 kb on + strand, within HMPREF1058_RS10250 at 699.795 kb on + strand, within HMPREF1058_RS10250 at 699.805 kb on + strand, within HMPREF1058_RS10250 at 699.807 kb on + strand at 699.818 kb on + strand at 699.865 kb on + strand at 699.882 kb on + strand at 699.939 kb on + strand at 699.939 kb on + strand at 699.939 kb on + strand at 699.940 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 697,724 + HMPREF1058_RS10265 0.23 -1.8 697,785 + HMPREF1058_RS10265 0.51 -1.6 697,898 + -0.8 697,910 + -1.3 697,911 - -1.8 697,923 - -0.4 698,001 + HMPREF1058_RS10260 0.14 -0.6 698,002 - HMPREF1058_RS10260 0.14 -0.5 698,139 + HMPREF1058_RS10260 0.32 -0.6 698,153 - HMPREF1058_RS10260 0.34 -0.9 698,154 + HMPREF1058_RS10260 0.34 -0.2 698,157 + HMPREF1058_RS10260 0.34 -0.8 698,221 - HMPREF1058_RS10260 0.43 -2.8 698,279 + HMPREF1058_RS10260 0.50 -2.0 698,365 + HMPREF1058_RS10260 0.62 +1.0 698,365 + HMPREF1058_RS10260 0.62 +0.4 698,373 + HMPREF1058_RS10260 0.63 -0.4 698,373 + HMPREF1058_RS10260 0.63 -0.9 698,374 - HMPREF1058_RS10260 0.63 -0.2 698,374 - HMPREF1058_RS10260 0.63 -0.7 698,374 - HMPREF1058_RS10260 0.63 -0.4 698,395 + HMPREF1058_RS10260 0.65 +0.4 698,436 + HMPREF1058_RS10260 0.71 -1.2 698,451 + HMPREF1058_RS10260 0.73 -0.3 698,451 + HMPREF1058_RS10260 0.73 -1.8 698,517 + HMPREF1058_RS10260 0.81 +0.4 698,529 + HMPREF1058_RS10260 0.83 -0.1 698,530 - HMPREF1058_RS10260 0.83 -1.4 698,541 + HMPREF1058_RS10260 0.85 -1.8 698,541 + HMPREF1058_RS10260 0.85 -1.1 698,542 - HMPREF1058_RS10260 0.85 -0.6 698,553 + HMPREF1058_RS10260 0.86 +0.0 698,611 - -1.3 698,624 + -1.1 698,635 + -0.5 698,641 - -1.8 698,652 + -0.9 698,652 + -0.5 698,656 + +0.2 698,656 + -1.5 698,669 - -1.5 698,764 + HMPREF1058_RS10255 0.32 -1.5 698,822 + HMPREF1058_RS10255 0.50 -0.4 698,864 + HMPREF1058_RS10255 0.64 -0.3 698,864 + HMPREF1058_RS10255 0.64 +0.8 698,865 - HMPREF1058_RS10255 0.64 -1.4 698,890 - HMPREF1058_RS10255 0.72 -0.6 698,978 + -0.3 698,978 + +0.2 698,979 - -0.4 699,015 + -2.0 699,041 - +0.1 699,044 + -0.5 699,045 - +0.1 699,052 + +0.5 699,053 - +0.4 699,084 - -0.7 699,085 + +0.5 699,086 - -0.3 699,155 + +0.5 699,259 - -0.3 699,282 + -0.8 699,293 - -1.7 699,305 - +1.6 699,316 - +0.4 699,371 + HMPREF1058_RS10250 0.12 -0.7 699,372 + HMPREF1058_RS10250 0.12 +0.8 699,372 - HMPREF1058_RS10250 0.12 -0.1 699,396 + HMPREF1058_RS10250 0.16 -0.4 699,435 - HMPREF1058_RS10250 0.23 -1.6 699,451 + HMPREF1058_RS10250 0.26 +1.6 699,452 - HMPREF1058_RS10250 0.26 +0.1 699,454 + HMPREF1058_RS10250 0.27 +0.2 699,455 - HMPREF1058_RS10250 0.27 -0.2 699,455 - HMPREF1058_RS10250 0.27 +1.0 699,514 + HMPREF1058_RS10250 0.37 -1.0 699,514 + HMPREF1058_RS10250 0.37 -0.5 699,515 - HMPREF1058_RS10250 0.38 -0.1 699,517 + HMPREF1058_RS10250 0.38 -1.1 699,517 + HMPREF1058_RS10250 0.38 -1.7 699,566 - HMPREF1058_RS10250 0.47 -0.2 699,566 - HMPREF1058_RS10250 0.47 +0.3 699,567 + HMPREF1058_RS10250 0.47 -1.0 699,567 + HMPREF1058_RS10250 0.47 -0.8 699,568 - HMPREF1058_RS10250 0.47 -0.2 699,568 - HMPREF1058_RS10250 0.47 -0.5 699,569 + HMPREF1058_RS10250 0.47 -0.4 699,570 - HMPREF1058_RS10250 0.47 +0.6 699,570 - HMPREF1058_RS10250 0.47 -0.6 699,570 - HMPREF1058_RS10250 0.47 +2.4 699,570 - HMPREF1058_RS10250 0.47 -0.7 699,571 + HMPREF1058_RS10250 0.48 +0.3 699,582 + HMPREF1058_RS10250 0.50 +0.8 699,631 - HMPREF1058_RS10250 0.58 -0.0 699,662 - HMPREF1058_RS10250 0.64 +0.3 699,669 + HMPREF1058_RS10250 0.65 -0.1 699,682 - HMPREF1058_RS10250 0.68 -0.9 699,689 + HMPREF1058_RS10250 0.69 -0.5 699,690 - HMPREF1058_RS10250 0.69 -0.6 699,722 + HMPREF1058_RS10250 0.75 -0.3 699,746 + HMPREF1058_RS10250 0.79 +0.3 699,779 + HMPREF1058_RS10250 0.85 -0.0 699,780 - HMPREF1058_RS10250 0.85 -0.3 699,781 + HMPREF1058_RS10250 0.85 -0.0 699,795 + HMPREF1058_RS10250 0.88 -0.2 699,805 + HMPREF1058_RS10250 0.90 -0.5 699,807 + -0.1 699,818 + -0.9 699,865 + +1.2 699,882 + -0.7 699,939 + +0.0 699,939 + +0.2 699,939 + -0.3 699,940 - -0.1
Or see this region's nucleotide sequence