Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10080

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS10090 and HMPREF1058_RS10085 are separated by 97 nucleotidesHMPREF1058_RS10085 and HMPREF1058_RS10080 are separated by 528 nucleotidesHMPREF1058_RS10080 and HMPREF1058_RS10075 are separated by 23 nucleotides HMPREF1058_RS10090: HMPREF1058_RS10090 - phage integrase SAM-like domain-containing protein, at 723,597 to 724,940 _RS10090 HMPREF1058_RS10085: HMPREF1058_RS10085 - tRNA-Arg, at 725,038 to 725,109 _RS10085 HMPREF1058_RS10080: HMPREF1058_RS10080 - 2-oxoacid:acceptor oxidoreductase subunit alpha, at 725,638 to 727,485 _RS10080 HMPREF1058_RS10075: HMPREF1058_RS10075 - 2-oxoacid:ferredoxin oxidoreductase subunit beta, at 727,509 to 728,513 _RS10075 Position (kb) 725 726 727 728Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 724.664 kb on + strand, within HMPREF1058_RS10090at 724.698 kb on - strand, within HMPREF1058_RS10090at 724.746 kb on + strand, within HMPREF1058_RS10090at 724.767 kb on + strand, within HMPREF1058_RS10090at 724.768 kb on - strand, within HMPREF1058_RS10090at 724.808 kb on + strandat 724.817 kb on + strandat 724.819 kb on + strandat 724.820 kb on - strandat 724.822 kb on - strandat 724.867 kb on - strandat 724.877 kb on + strandat 724.880 kb on + strandat 724.880 kb on + strandat 724.885 kb on + strandat 724.885 kb on + strandat 724.886 kb on - strandat 724.940 kb on + strandat 724.961 kb on - strandat 724.967 kb on - strandat 724.967 kb on - strandat 724.967 kb on - strandat 725.062 kb on + strand, within HMPREF1058_RS10085at 725.202 kb on + strandat 725.271 kb on - strandat 725.293 kb on - strandat 725.457 kb on + strandat 725.485 kb on + strandat 725.486 kb on - strandat 725.517 kb on - strandat 725.552 kb on + strandat 725.632 kb on + strandat 725.736 kb on + strandat 725.736 kb on + strandat 725.769 kb on + strandat 725.770 kb on - strandat 725.795 kb on + strandat 725.796 kb on - strandat 725.952 kb on + strand, within HMPREF1058_RS10080at 725.952 kb on + strand, within HMPREF1058_RS10080at 725.952 kb on + strand, within HMPREF1058_RS10080at 725.965 kb on - strand, within HMPREF1058_RS10080at 726.050 kb on + strand, within HMPREF1058_RS10080at 726.050 kb on + strand, within HMPREF1058_RS10080at 726.097 kb on - strand, within HMPREF1058_RS10080at 726.136 kb on - strand, within HMPREF1058_RS10080at 726.283 kb on - strand, within HMPREF1058_RS10080at 726.307 kb on + strand, within HMPREF1058_RS10080at 726.307 kb on + strand, within HMPREF1058_RS10080at 726.307 kb on + strand, within HMPREF1058_RS10080at 726.308 kb on - strand, within HMPREF1058_RS10080at 726.309 kb on + strand, within HMPREF1058_RS10080at 726.309 kb on + strand, within HMPREF1058_RS10080at 726.327 kb on + strand, within HMPREF1058_RS10080at 726.332 kb on - strand, within HMPREF1058_RS10080at 726.333 kb on - strand, within HMPREF1058_RS10080at 726.344 kb on - strand, within HMPREF1058_RS10080at 726.384 kb on - strand, within HMPREF1058_RS10080at 726.478 kb on - strand, within HMPREF1058_RS10080at 726.478 kb on - strand, within HMPREF1058_RS10080at 726.576 kb on + strand, within HMPREF1058_RS10080at 726.638 kb on + strand, within HMPREF1058_RS10080at 726.638 kb on + strand, within HMPREF1058_RS10080at 726.639 kb on - strand, within HMPREF1058_RS10080at 726.652 kb on - strand, within HMPREF1058_RS10080at 726.659 kb on + strand, within HMPREF1058_RS10080at 726.659 kb on + strand, within HMPREF1058_RS10080at 726.799 kb on + strand, within HMPREF1058_RS10080at 726.800 kb on - strand, within HMPREF1058_RS10080at 726.810 kb on + strand, within HMPREF1058_RS10080at 726.810 kb on + strand, within HMPREF1058_RS10080at 726.811 kb on - strand, within HMPREF1058_RS10080at 726.928 kb on + strand, within HMPREF1058_RS10080at 726.928 kb on + strand, within HMPREF1058_RS10080at 726.929 kb on - strand, within HMPREF1058_RS10080at 726.929 kb on - strand, within HMPREF1058_RS10080at 726.952 kb on - strand, within HMPREF1058_RS10080at 726.952 kb on - strand, within HMPREF1058_RS10080at 727.024 kb on - strandat 727.024 kb on - strand, within HMPREF1058_RS10080at 727.030 kb on - strand, within HMPREF1058_RS10080at 727.068 kb on + strand, within HMPREF1058_RS10080at 727.069 kb on - strand, within HMPREF1058_RS10080at 727.093 kb on - strand, within HMPREF1058_RS10080at 727.207 kb on + strand, within HMPREF1058_RS10080at 727.207 kb on + strand, within HMPREF1058_RS10080at 727.208 kb on - strand, within HMPREF1058_RS10080at 727.217 kb on + strand, within HMPREF1058_RS10080at 727.218 kb on - strand, within HMPREF1058_RS10080at 727.218 kb on - strand, within HMPREF1058_RS10080at 727.220 kb on - strand, within HMPREF1058_RS10080at 727.302 kb on + strandat 727.326 kb on + strandat 727.439 kb on + strandat 727.480 kb on - strandat 727.519 kb on - strandat 727.677 kb on + strand, within HMPREF1058_RS10075at 727.680 kb on + strand, within HMPREF1058_RS10075at 727.681 kb on - strand, within HMPREF1058_RS10075at 727.688 kb on + strand, within HMPREF1058_RS10075at 727.688 kb on + strand, within HMPREF1058_RS10075at 727.689 kb on - strand, within HMPREF1058_RS10075at 727.689 kb on - strand, within HMPREF1058_RS10075at 727.689 kb on - strand, within HMPREF1058_RS10075at 727.693 kb on - strand, within HMPREF1058_RS10075at 727.728 kb on - strand, within HMPREF1058_RS10075at 727.763 kb on + strand, within HMPREF1058_RS10075at 727.900 kb on - strand, within HMPREF1058_RS10075at 727.928 kb on + strand, within HMPREF1058_RS10075at 728.072 kb on + strand, within HMPREF1058_RS10075at 728.073 kb on - strand, within HMPREF1058_RS10075at 728.086 kb on + strand, within HMPREF1058_RS10075at 728.140 kb on + strand, within HMPREF1058_RS10075at 728.140 kb on + strandat 728.141 kb on - strand, within HMPREF1058_RS10075at 728.143 kb on - strand, within HMPREF1058_RS10075at 728.144 kb on + strand, within HMPREF1058_RS10075at 728.144 kb on + strand, within HMPREF1058_RS10075at 728.145 kb on - strand, within HMPREF1058_RS10075at 728.176 kb on - strand, within HMPREF1058_RS10075at 728.210 kb on - strand, within HMPREF1058_RS10075at 728.296 kb on + strand, within HMPREF1058_RS10075at 728.409 kb on + strand, within HMPREF1058_RS10075

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
remove
724,664 + HMPREF1058_RS10090 0.79 -1.3
724,698 - HMPREF1058_RS10090 0.82 -0.0
724,746 + HMPREF1058_RS10090 0.85 +0.8
724,767 + HMPREF1058_RS10090 0.87 +1.7
724,768 - HMPREF1058_RS10090 0.87 +0.5
724,808 + -0.4
724,817 + +0.2
724,819 + +1.5
724,820 - +0.2
724,822 - +1.0
724,867 - +1.2
724,877 + +0.2
724,880 + +0.1
724,880 + +1.0
724,885 + +0.0
724,885 + +0.8
724,886 - -0.1
724,940 + -0.4
724,961 - +1.0
724,967 - +1.2
724,967 - +0.9
724,967 - +0.4
725,062 + HMPREF1058_RS10085 0.33 -2.2
725,202 + -1.1
725,271 - -2.1
725,293 - -0.8
725,457 + -0.8
725,485 + +0.6
725,486 - +0.2
725,517 - -0.2
725,552 + -0.4
725,632 + -1.7
725,736 + -5.1
725,736 + -2.1
725,769 + -1.0
725,770 - -1.8
725,795 + -0.9
725,796 - -1.3
725,952 + HMPREF1058_RS10080 0.17 -2.0
725,952 + HMPREF1058_RS10080 0.17 +1.3
725,952 + HMPREF1058_RS10080 0.17 -0.6
725,965 - HMPREF1058_RS10080 0.18 -3.0
726,050 + HMPREF1058_RS10080 0.22 -2.3
726,050 + HMPREF1058_RS10080 0.22 +1.4
726,097 - HMPREF1058_RS10080 0.25 -1.4
726,136 - HMPREF1058_RS10080 0.27 -1.4
726,283 - HMPREF1058_RS10080 0.35 -0.3
726,307 + HMPREF1058_RS10080 0.36 -2.5
726,307 + HMPREF1058_RS10080 0.36 +1.5
726,307 + HMPREF1058_RS10080 0.36 -1.6
726,308 - HMPREF1058_RS10080 0.36 +0.1
726,309 + HMPREF1058_RS10080 0.36 -1.9
726,309 + HMPREF1058_RS10080 0.36 -0.4
726,327 + HMPREF1058_RS10080 0.37 -1.2
726,332 - HMPREF1058_RS10080 0.38 -4.1
726,333 - HMPREF1058_RS10080 0.38 -1.4
726,344 - HMPREF1058_RS10080 0.38 -1.8
726,384 - HMPREF1058_RS10080 0.40 -1.8
726,478 - HMPREF1058_RS10080 0.45 -2.4
726,478 - HMPREF1058_RS10080 0.45 -1.7
726,576 + HMPREF1058_RS10080 0.51 -2.5
726,638 + HMPREF1058_RS10080 0.54 -2.2
726,638 + HMPREF1058_RS10080 0.54 -0.9
726,639 - HMPREF1058_RS10080 0.54 -1.1
726,652 - HMPREF1058_RS10080 0.55 -1.9
726,659 + HMPREF1058_RS10080 0.55 -1.0
726,659 + HMPREF1058_RS10080 0.55 -0.8
726,799 + HMPREF1058_RS10080 0.63 -0.4
726,800 - HMPREF1058_RS10080 0.63 -2.4
726,810 + HMPREF1058_RS10080 0.63 -0.2
726,810 + HMPREF1058_RS10080 0.63 -2.3
726,811 - HMPREF1058_RS10080 0.63 -1.7
726,928 + HMPREF1058_RS10080 0.70 -0.8
726,928 + HMPREF1058_RS10080 0.70 -2.6
726,929 - HMPREF1058_RS10080 0.70 -1.9
726,929 - HMPREF1058_RS10080 0.70 -2.5
726,952 - HMPREF1058_RS10080 0.71 -1.0
726,952 - HMPREF1058_RS10080 0.71 -3.1
727,024 - -0.8
727,024 - HMPREF1058_RS10080 0.75 -1.5
727,030 - HMPREF1058_RS10080 0.75 -3.2
727,068 + HMPREF1058_RS10080 0.77 -2.0
727,069 - HMPREF1058_RS10080 0.77 -3.2
727,093 - HMPREF1058_RS10080 0.79 -2.8
727,207 + HMPREF1058_RS10080 0.85 -1.4
727,207 + HMPREF1058_RS10080 0.85 -2.3
727,208 - HMPREF1058_RS10080 0.85 -1.9
727,217 + HMPREF1058_RS10080 0.85 +0.3
727,218 - HMPREF1058_RS10080 0.85 -2.0
727,218 - HMPREF1058_RS10080 0.85 -1.5
727,220 - HMPREF1058_RS10080 0.86 -1.9
727,302 + -1.4
727,326 + -1.8
727,439 + -1.5
727,480 - -0.5
727,519 - -0.4
727,677 + HMPREF1058_RS10075 0.17 -0.6
727,680 + HMPREF1058_RS10075 0.17 -0.4
727,681 - HMPREF1058_RS10075 0.17 -2.1
727,688 + HMPREF1058_RS10075 0.18 -2.4
727,688 + HMPREF1058_RS10075 0.18 -2.5
727,689 - HMPREF1058_RS10075 0.18 -0.6
727,689 - HMPREF1058_RS10075 0.18 -4.6
727,689 - HMPREF1058_RS10075 0.18 -1.6
727,693 - HMPREF1058_RS10075 0.18 -5.0
727,728 - HMPREF1058_RS10075 0.22 +0.1
727,763 + HMPREF1058_RS10075 0.25 -1.8
727,900 - HMPREF1058_RS10075 0.39 -1.0
727,928 + HMPREF1058_RS10075 0.42 +0.8
728,072 + HMPREF1058_RS10075 0.56 -0.9
728,073 - HMPREF1058_RS10075 0.56 -1.6
728,086 + HMPREF1058_RS10075 0.57 -2.5
728,140 + HMPREF1058_RS10075 0.63 -1.8
728,140 + -1.1
728,141 - HMPREF1058_RS10075 0.63 -1.4
728,143 - HMPREF1058_RS10075 0.63 -1.2
728,144 + HMPREF1058_RS10075 0.63 -1.8
728,144 + HMPREF1058_RS10075 0.63 -1.8
728,145 - HMPREF1058_RS10075 0.63 -0.3
728,176 - HMPREF1058_RS10075 0.66 -2.7
728,210 - HMPREF1058_RS10075 0.70 +0.3
728,296 + HMPREF1058_RS10075 0.78 -1.4
728,409 + HMPREF1058_RS10075 0.90 -2.8

Or see this region's nucleotide sequence