Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10080 and HMPREF1058_RS10075 are separated by 23 nucleotides HMPREF1058_RS10075 and HMPREF1058_RS10070 are separated by 156 nucleotides
HMPREF1058_RS10080: HMPREF1058_RS10080 - 2-oxoacid:acceptor oxidoreductase subunit alpha, at 725,638 to 727,485
_RS10080
HMPREF1058_RS10075: HMPREF1058_RS10075 - 2-oxoacid:ferredoxin oxidoreductase subunit beta, at 727,509 to 728,513
_RS10075
HMPREF1058_RS10070: HMPREF1058_RS10070 - uracil phosphoribosyltransferase, at 728,670 to 729,329
_RS10070
Position (kb) 727
728
729 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 726.576 kb on + strand, within HMPREF1058_RS10080 at 726.638 kb on + strand, within HMPREF1058_RS10080 at 726.638 kb on + strand, within HMPREF1058_RS10080 at 726.639 kb on - strand, within HMPREF1058_RS10080 at 726.652 kb on - strand, within HMPREF1058_RS10080 at 726.659 kb on + strand, within HMPREF1058_RS10080 at 726.659 kb on + strand, within HMPREF1058_RS10080 at 726.799 kb on + strand, within HMPREF1058_RS10080 at 726.800 kb on - strand, within HMPREF1058_RS10080 at 726.810 kb on + strand, within HMPREF1058_RS10080 at 726.810 kb on + strand, within HMPREF1058_RS10080 at 726.811 kb on - strand, within HMPREF1058_RS10080 at 726.928 kb on + strand, within HMPREF1058_RS10080 at 726.928 kb on + strand, within HMPREF1058_RS10080 at 726.929 kb on - strand, within HMPREF1058_RS10080 at 726.929 kb on - strand, within HMPREF1058_RS10080 at 726.952 kb on - strand, within HMPREF1058_RS10080 at 726.952 kb on - strand, within HMPREF1058_RS10080 at 727.024 kb on - strand at 727.024 kb on - strand, within HMPREF1058_RS10080 at 727.030 kb on - strand, within HMPREF1058_RS10080 at 727.068 kb on + strand, within HMPREF1058_RS10080 at 727.069 kb on - strand, within HMPREF1058_RS10080 at 727.093 kb on - strand, within HMPREF1058_RS10080 at 727.207 kb on + strand, within HMPREF1058_RS10080 at 727.207 kb on + strand, within HMPREF1058_RS10080 at 727.208 kb on - strand, within HMPREF1058_RS10080 at 727.217 kb on + strand, within HMPREF1058_RS10080 at 727.218 kb on - strand, within HMPREF1058_RS10080 at 727.218 kb on - strand, within HMPREF1058_RS10080 at 727.220 kb on - strand, within HMPREF1058_RS10080 at 727.302 kb on + strand at 727.326 kb on + strand at 727.439 kb on + strand at 727.480 kb on - strand at 727.519 kb on - strand at 727.677 kb on + strand, within HMPREF1058_RS10075 at 727.680 kb on + strand, within HMPREF1058_RS10075 at 727.681 kb on - strand, within HMPREF1058_RS10075 at 727.688 kb on + strand, within HMPREF1058_RS10075 at 727.688 kb on + strand, within HMPREF1058_RS10075 at 727.689 kb on - strand, within HMPREF1058_RS10075 at 727.689 kb on - strand, within HMPREF1058_RS10075 at 727.689 kb on - strand, within HMPREF1058_RS10075 at 727.693 kb on - strand, within HMPREF1058_RS10075 at 727.728 kb on - strand, within HMPREF1058_RS10075 at 727.763 kb on + strand, within HMPREF1058_RS10075 at 727.900 kb on - strand, within HMPREF1058_RS10075 at 727.928 kb on + strand, within HMPREF1058_RS10075 at 728.072 kb on + strand, within HMPREF1058_RS10075 at 728.073 kb on - strand, within HMPREF1058_RS10075 at 728.086 kb on + strand, within HMPREF1058_RS10075 at 728.140 kb on + strand, within HMPREF1058_RS10075 at 728.140 kb on + strand at 728.141 kb on - strand, within HMPREF1058_RS10075 at 728.143 kb on - strand, within HMPREF1058_RS10075 at 728.144 kb on + strand, within HMPREF1058_RS10075 at 728.144 kb on + strand, within HMPREF1058_RS10075 at 728.145 kb on - strand, within HMPREF1058_RS10075 at 728.176 kb on - strand, within HMPREF1058_RS10075 at 728.210 kb on - strand, within HMPREF1058_RS10075 at 728.296 kb on + strand, within HMPREF1058_RS10075 at 728.409 kb on + strand, within HMPREF1058_RS10075 at 728.532 kb on - strand at 728.578 kb on + strand at 728.579 kb on - strand at 728.612 kb on - strand at 728.659 kb on + strand at 728.659 kb on + strand at 728.659 kb on + strand at 728.659 kb on + strand at 728.660 kb on - strand at 728.726 kb on - strand at 728.726 kb on - strand at 728.751 kb on + strand, within HMPREF1058_RS10070 at 728.801 kb on + strand, within HMPREF1058_RS10070 at 728.868 kb on - strand, within HMPREF1058_RS10070 at 728.977 kb on - strand, within HMPREF1058_RS10070 at 728.982 kb on + strand, within HMPREF1058_RS10070 at 728.988 kb on - strand, within HMPREF1058_RS10070 at 729.157 kb on - strand, within HMPREF1058_RS10070 at 729.197 kb on - strand, within HMPREF1058_RS10070 at 729.261 kb on + strand, within HMPREF1058_RS10070 at 729.262 kb on - strand, within HMPREF1058_RS10070 at 729.279 kb on + strand at 729.284 kb on - strand at 729.284 kb on - strand at 729.333 kb on + strand at 729.345 kb on - strand at 729.345 kb on - strand at 729.347 kb on - strand at 729.378 kb on - strand at 729.425 kb on + strand at 729.429 kb on + strand at 729.486 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 726,576 + HMPREF1058_RS10080 0.51 -2.5 726,638 + HMPREF1058_RS10080 0.54 -2.2 726,638 + HMPREF1058_RS10080 0.54 -0.9 726,639 - HMPREF1058_RS10080 0.54 -1.1 726,652 - HMPREF1058_RS10080 0.55 -1.9 726,659 + HMPREF1058_RS10080 0.55 -1.0 726,659 + HMPREF1058_RS10080 0.55 -0.8 726,799 + HMPREF1058_RS10080 0.63 -0.4 726,800 - HMPREF1058_RS10080 0.63 -2.4 726,810 + HMPREF1058_RS10080 0.63 -0.2 726,810 + HMPREF1058_RS10080 0.63 -2.3 726,811 - HMPREF1058_RS10080 0.63 -1.7 726,928 + HMPREF1058_RS10080 0.70 -0.8 726,928 + HMPREF1058_RS10080 0.70 -2.6 726,929 - HMPREF1058_RS10080 0.70 -1.9 726,929 - HMPREF1058_RS10080 0.70 -2.5 726,952 - HMPREF1058_RS10080 0.71 -1.0 726,952 - HMPREF1058_RS10080 0.71 -3.1 727,024 - -0.8 727,024 - HMPREF1058_RS10080 0.75 -1.5 727,030 - HMPREF1058_RS10080 0.75 -3.2 727,068 + HMPREF1058_RS10080 0.77 -2.0 727,069 - HMPREF1058_RS10080 0.77 -3.2 727,093 - HMPREF1058_RS10080 0.79 -2.8 727,207 + HMPREF1058_RS10080 0.85 -1.4 727,207 + HMPREF1058_RS10080 0.85 -2.3 727,208 - HMPREF1058_RS10080 0.85 -1.9 727,217 + HMPREF1058_RS10080 0.85 +0.3 727,218 - HMPREF1058_RS10080 0.85 -2.0 727,218 - HMPREF1058_RS10080 0.85 -1.5 727,220 - HMPREF1058_RS10080 0.86 -1.9 727,302 + -1.4 727,326 + -1.8 727,439 + -1.5 727,480 - -0.5 727,519 - -0.4 727,677 + HMPREF1058_RS10075 0.17 -0.6 727,680 + HMPREF1058_RS10075 0.17 -0.4 727,681 - HMPREF1058_RS10075 0.17 -2.1 727,688 + HMPREF1058_RS10075 0.18 -2.4 727,688 + HMPREF1058_RS10075 0.18 -2.5 727,689 - HMPREF1058_RS10075 0.18 -0.6 727,689 - HMPREF1058_RS10075 0.18 -4.6 727,689 - HMPREF1058_RS10075 0.18 -1.6 727,693 - HMPREF1058_RS10075 0.18 -5.0 727,728 - HMPREF1058_RS10075 0.22 +0.1 727,763 + HMPREF1058_RS10075 0.25 -1.8 727,900 - HMPREF1058_RS10075 0.39 -1.0 727,928 + HMPREF1058_RS10075 0.42 +0.8 728,072 + HMPREF1058_RS10075 0.56 -0.9 728,073 - HMPREF1058_RS10075 0.56 -1.6 728,086 + HMPREF1058_RS10075 0.57 -2.5 728,140 + HMPREF1058_RS10075 0.63 -1.8 728,140 + -1.1 728,141 - HMPREF1058_RS10075 0.63 -1.4 728,143 - HMPREF1058_RS10075 0.63 -1.2 728,144 + HMPREF1058_RS10075 0.63 -1.8 728,144 + HMPREF1058_RS10075 0.63 -1.8 728,145 - HMPREF1058_RS10075 0.63 -0.3 728,176 - HMPREF1058_RS10075 0.66 -2.7 728,210 - HMPREF1058_RS10075 0.70 +0.3 728,296 + HMPREF1058_RS10075 0.78 -1.4 728,409 + HMPREF1058_RS10075 0.90 -2.8 728,532 - +1.4 728,578 + -1.4 728,579 - -0.5 728,612 - +0.1 728,659 + +0.4 728,659 + -1.0 728,659 + -1.1 728,659 + +2.4 728,660 - +1.1 728,726 - +0.3 728,726 - -0.1 728,751 + HMPREF1058_RS10070 0.12 +1.5 728,801 + HMPREF1058_RS10070 0.20 -0.3 728,868 - HMPREF1058_RS10070 0.30 +0.0 728,977 - HMPREF1058_RS10070 0.47 -0.1 728,982 + HMPREF1058_RS10070 0.47 -0.3 728,988 - HMPREF1058_RS10070 0.48 +0.3 729,157 - HMPREF1058_RS10070 0.74 -0.3 729,197 - HMPREF1058_RS10070 0.80 +0.3 729,261 + HMPREF1058_RS10070 0.90 -1.1 729,262 - HMPREF1058_RS10070 0.90 -1.3 729,279 + -0.4 729,284 - +0.5 729,284 - +0.7 729,333 + -0.0 729,345 - +0.9 729,345 - -1.4 729,347 - +0.5 729,378 - -0.2 729,425 + -1.0 729,429 + -0.4 729,486 + -0.7
Or see this region's nucleotide sequence