Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09755 and HMPREF1058_RS09750 are separated by 25 nucleotides HMPREF1058_RS09750 and HMPREF1058_RS09745 overlap by 8 nucleotides
HMPREF1058_RS09755: HMPREF1058_RS09755 - YfhO family protein, at 802,043 to 804,535
_RS09755
HMPREF1058_RS09750: HMPREF1058_RS09750 - glycosyltransferase, at 804,561 to 805,307
_RS09750
HMPREF1058_RS09745: HMPREF1058_RS09745 - glycosyltransferase, at 805,300 to 806,562
_RS09745
Position (kb) 804
805
806 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 804.592 kb on - strand at 804.592 kb on - strand at 804.601 kb on - strand at 804.698 kb on - strand, within HMPREF1058_RS09750 at 804.843 kb on + strand, within HMPREF1058_RS09750 at 804.902 kb on + strand, within HMPREF1058_RS09750 at 804.904 kb on + strand, within HMPREF1058_RS09750 at 804.949 kb on - strand, within HMPREF1058_RS09750 at 804.984 kb on + strand, within HMPREF1058_RS09750 at 805.001 kb on + strand, within HMPREF1058_RS09750 at 805.002 kb on - strand, within HMPREF1058_RS09750 at 805.124 kb on + strand, within HMPREF1058_RS09750 at 805.125 kb on - strand, within HMPREF1058_RS09750 at 805.136 kb on - strand, within HMPREF1058_RS09750 at 805.136 kb on - strand, within HMPREF1058_RS09750 at 805.187 kb on + strand, within HMPREF1058_RS09750 at 805.190 kb on - strand, within HMPREF1058_RS09750 at 805.203 kb on - strand, within HMPREF1058_RS09750 at 805.243 kb on - strand at 805.268 kb on + strand at 805.269 kb on - strand at 805.340 kb on + strand at 805.341 kb on - strand at 805.515 kb on + strand, within HMPREF1058_RS09745 at 805.572 kb on + strand, within HMPREF1058_RS09745 at 805.579 kb on + strand, within HMPREF1058_RS09745 at 805.592 kb on - strand, within HMPREF1058_RS09745 at 805.610 kb on - strand, within HMPREF1058_RS09745 at 805.658 kb on + strand, within HMPREF1058_RS09745 at 805.659 kb on - strand, within HMPREF1058_RS09745 at 805.674 kb on + strand, within HMPREF1058_RS09745 at 805.697 kb on + strand, within HMPREF1058_RS09745 at 805.698 kb on - strand, within HMPREF1058_RS09745 at 805.791 kb on - strand, within HMPREF1058_RS09745 at 805.981 kb on + strand, within HMPREF1058_RS09745 at 806.000 kb on - strand, within HMPREF1058_RS09745 at 806.050 kb on - strand, within HMPREF1058_RS09745 at 806.055 kb on - strand, within HMPREF1058_RS09745 at 806.115 kb on - strand, within HMPREF1058_RS09745 at 806.163 kb on + strand, within HMPREF1058_RS09745 at 806.163 kb on + strand, within HMPREF1058_RS09745 at 806.205 kb on + strand, within HMPREF1058_RS09745 at 806.233 kb on - strand, within HMPREF1058_RS09745 at 806.233 kb on - strand, within HMPREF1058_RS09745 at 806.233 kb on - strand, within HMPREF1058_RS09745 at 806.233 kb on - strand, within HMPREF1058_RS09745
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 804,592 - +1.4 804,592 - -2.2 804,601 - -2.2 804,698 - HMPREF1058_RS09750 0.18 +0.1 804,843 + HMPREF1058_RS09750 0.38 -0.2 804,902 + HMPREF1058_RS09750 0.46 -3.3 804,904 + HMPREF1058_RS09750 0.46 +1.4 804,949 - HMPREF1058_RS09750 0.52 -0.3 804,984 + HMPREF1058_RS09750 0.57 -0.7 805,001 + HMPREF1058_RS09750 0.59 -0.4 805,002 - HMPREF1058_RS09750 0.59 -4.2 805,124 + HMPREF1058_RS09750 0.75 -0.9 805,125 - HMPREF1058_RS09750 0.76 -1.8 805,136 - HMPREF1058_RS09750 0.77 -1.0 805,136 - HMPREF1058_RS09750 0.77 -1.0 805,187 + HMPREF1058_RS09750 0.84 -1.4 805,190 - HMPREF1058_RS09750 0.84 +0.8 805,203 - HMPREF1058_RS09750 0.86 -0.9 805,243 - -0.7 805,268 + +0.4 805,269 - -1.1 805,340 + -3.8 805,341 - +3.1 805,515 + HMPREF1058_RS09745 0.17 -1.8 805,572 + HMPREF1058_RS09745 0.22 -3.4 805,579 + HMPREF1058_RS09745 0.22 -2.4 805,592 - HMPREF1058_RS09745 0.23 -0.1 805,610 - HMPREF1058_RS09745 0.25 +0.6 805,658 + HMPREF1058_RS09745 0.28 -1.0 805,659 - HMPREF1058_RS09745 0.28 -0.8 805,674 + HMPREF1058_RS09745 0.30 -1.3 805,697 + HMPREF1058_RS09745 0.31 -1.2 805,698 - HMPREF1058_RS09745 0.32 +1.4 805,791 - HMPREF1058_RS09745 0.39 +0.5 805,981 + HMPREF1058_RS09745 0.54 -1.1 806,000 - HMPREF1058_RS09745 0.55 +1.0 806,050 - HMPREF1058_RS09745 0.59 -0.4 806,055 - HMPREF1058_RS09745 0.60 +0.1 806,115 - HMPREF1058_RS09745 0.65 -0.5 806,163 + HMPREF1058_RS09745 0.68 -3.3 806,163 + HMPREF1058_RS09745 0.68 -2.3 806,205 + HMPREF1058_RS09745 0.72 -0.8 806,233 - HMPREF1058_RS09745 0.74 -2.6 806,233 - HMPREF1058_RS09745 0.74 -0.6 806,233 - HMPREF1058_RS09745 0.74 -0.6 806,233 - HMPREF1058_RS09745 0.74 -0.9
Or see this region's nucleotide sequence