Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09595 and HMPREF1058_RS09590 are separated by 97 nucleotides HMPREF1058_RS09590 and HMPREF1058_RS09585 are separated by 14 nucleotides HMPREF1058_RS09585 and HMPREF1058_RS09580 are separated by 23 nucleotides
HMPREF1058_RS09595: HMPREF1058_RS09595 - orotate phosphoribosyltransferase, at 839,701 to 840,339
_RS09595
HMPREF1058_RS09590: HMPREF1058_RS09590 - hypothetical protein, at 840,437 to 840,841
_RS09590
HMPREF1058_RS09585: HMPREF1058_RS09585 - argininosuccinate lyase, at 840,856 to 842,196
_RS09585
HMPREF1058_RS09580: HMPREF1058_RS09580 - aldo/keto reductase, at 842,220 to 843,212
_RS09580
Position (kb) 840
841
842
843 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 840.145 kb on - strand, within HMPREF1058_RS09595 at 840.337 kb on + strand at 840.359 kb on + strand at 840.360 kb on - strand at 840.361 kb on + strand at 840.464 kb on + strand at 840.465 kb on - strand at 840.465 kb on - strand at 840.497 kb on - strand, within HMPREF1058_RS09590 at 840.497 kb on - strand, within HMPREF1058_RS09590 at 840.510 kb on + strand, within HMPREF1058_RS09590 at 840.528 kb on + strand, within HMPREF1058_RS09590 at 840.553 kb on - strand, within HMPREF1058_RS09590 at 840.559 kb on + strand, within HMPREF1058_RS09590 at 840.595 kb on - strand, within HMPREF1058_RS09590 at 840.595 kb on - strand, within HMPREF1058_RS09590 at 840.640 kb on + strand, within HMPREF1058_RS09590 at 840.739 kb on + strand, within HMPREF1058_RS09590 at 840.739 kb on + strand, within HMPREF1058_RS09590 at 840.757 kb on + strand, within HMPREF1058_RS09590 at 840.763 kb on + strand, within HMPREF1058_RS09590 at 840.763 kb on + strand, within HMPREF1058_RS09590 at 840.763 kb on + strand, within HMPREF1058_RS09590 at 840.855 kb on + strand at 840.903 kb on - strand at 840.944 kb on - strand at 840.962 kb on + strand at 840.962 kb on + strand at 840.982 kb on - strand at 840.999 kb on + strand, within HMPREF1058_RS09585 at 841.035 kb on - strand, within HMPREF1058_RS09585 at 841.046 kb on + strand, within HMPREF1058_RS09585 at 841.053 kb on + strand, within HMPREF1058_RS09585 at 841.057 kb on + strand, within HMPREF1058_RS09585 at 841.057 kb on + strand, within HMPREF1058_RS09585 at 841.057 kb on + strand, within HMPREF1058_RS09585 at 841.057 kb on + strand, within HMPREF1058_RS09585 at 841.058 kb on - strand, within HMPREF1058_RS09585 at 841.109 kb on + strand, within HMPREF1058_RS09585 at 841.110 kb on - strand, within HMPREF1058_RS09585 at 841.121 kb on + strand, within HMPREF1058_RS09585 at 841.219 kb on - strand, within HMPREF1058_RS09585 at 841.290 kb on + strand, within HMPREF1058_RS09585 at 841.291 kb on - strand, within HMPREF1058_RS09585 at 841.291 kb on - strand, within HMPREF1058_RS09585 at 841.294 kb on + strand, within HMPREF1058_RS09585 at 841.294 kb on + strand, within HMPREF1058_RS09585 at 841.295 kb on - strand, within HMPREF1058_RS09585 at 841.295 kb on - strand, within HMPREF1058_RS09585 at 841.295 kb on - strand, within HMPREF1058_RS09585 at 841.296 kb on + strand, within HMPREF1058_RS09585 at 841.296 kb on + strand, within HMPREF1058_RS09585 at 841.296 kb on + strand, within HMPREF1058_RS09585 at 841.297 kb on - strand, within HMPREF1058_RS09585 at 841.297 kb on - strand, within HMPREF1058_RS09585 at 841.526 kb on - strand, within HMPREF1058_RS09585 at 841.527 kb on + strand, within HMPREF1058_RS09585 at 841.527 kb on + strand, within HMPREF1058_RS09585 at 841.527 kb on + strand, within HMPREF1058_RS09585 at 841.528 kb on - strand, within HMPREF1058_RS09585 at 841.528 kb on - strand, within HMPREF1058_RS09585 at 841.537 kb on + strand, within HMPREF1058_RS09585 at 841.537 kb on + strand, within HMPREF1058_RS09585 at 841.558 kb on - strand, within HMPREF1058_RS09585 at 841.632 kb on + strand, within HMPREF1058_RS09585 at 841.632 kb on + strand, within HMPREF1058_RS09585 at 841.696 kb on - strand, within HMPREF1058_RS09585 at 841.697 kb on + strand, within HMPREF1058_RS09585 at 841.832 kb on + strand, within HMPREF1058_RS09585 at 841.891 kb on + strand, within HMPREF1058_RS09585 at 841.893 kb on + strand, within HMPREF1058_RS09585 at 841.893 kb on + strand, within HMPREF1058_RS09585 at 841.894 kb on - strand, within HMPREF1058_RS09585 at 841.924 kb on - strand, within HMPREF1058_RS09585 at 841.924 kb on - strand, within HMPREF1058_RS09585 at 841.948 kb on + strand, within HMPREF1058_RS09585 at 841.948 kb on + strand, within HMPREF1058_RS09585 at 841.948 kb on + strand, within HMPREF1058_RS09585 at 841.948 kb on + strand, within HMPREF1058_RS09585 at 841.949 kb on - strand, within HMPREF1058_RS09585 at 841.957 kb on - strand, within HMPREF1058_RS09585 at 842.014 kb on - strand, within HMPREF1058_RS09585 at 842.033 kb on + strand, within HMPREF1058_RS09585 at 842.033 kb on + strand, within HMPREF1058_RS09585 at 842.034 kb on - strand at 842.074 kb on - strand at 842.074 kb on - strand at 842.085 kb on + strand at 842.187 kb on - strand at 842.200 kb on + strand at 842.213 kb on + strand at 842.226 kb on + strand at 842.227 kb on - strand at 842.268 kb on + strand at 842.301 kb on - strand at 842.321 kb on + strand, within HMPREF1058_RS09580 at 842.366 kb on + strand, within HMPREF1058_RS09580 at 842.367 kb on - strand, within HMPREF1058_RS09580 at 842.411 kb on + strand, within HMPREF1058_RS09580 at 842.412 kb on - strand, within HMPREF1058_RS09580 at 842.499 kb on - strand, within HMPREF1058_RS09580 at 842.499 kb on - strand, within HMPREF1058_RS09580 at 842.610 kb on + strand, within HMPREF1058_RS09580 at 842.620 kb on + strand, within HMPREF1058_RS09580 at 842.620 kb on + strand, within HMPREF1058_RS09580 at 842.626 kb on - strand, within HMPREF1058_RS09580 at 842.627 kb on + strand, within HMPREF1058_RS09580 at 842.628 kb on - strand, within HMPREF1058_RS09580 at 842.687 kb on - strand, within HMPREF1058_RS09580 at 842.687 kb on - strand, within HMPREF1058_RS09580 at 842.709 kb on + strand, within HMPREF1058_RS09580 at 842.709 kb on + strand, within HMPREF1058_RS09580 at 842.709 kb on + strand, within HMPREF1058_RS09580 at 842.710 kb on - strand, within HMPREF1058_RS09580 at 842.807 kb on + strand, within HMPREF1058_RS09580 at 842.807 kb on + strand, within HMPREF1058_RS09580 at 842.807 kb on + strand, within HMPREF1058_RS09580 at 842.810 kb on + strand, within HMPREF1058_RS09580 at 842.811 kb on - strand at 842.811 kb on - strand, within HMPREF1058_RS09580 at 842.873 kb on + strand, within HMPREF1058_RS09580 at 842.912 kb on + strand, within HMPREF1058_RS09580
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 840,145 - HMPREF1058_RS09595 0.69 -0.6 840,337 + +0.8 840,359 + -0.7 840,360 - -2.8 840,361 + +1.2 840,464 + -0.2 840,465 - -1.6 840,465 - -2.1 840,497 - HMPREF1058_RS09590 0.15 -0.4 840,497 - HMPREF1058_RS09590 0.15 -2.3 840,510 + HMPREF1058_RS09590 0.18 +0.6 840,528 + HMPREF1058_RS09590 0.22 -1.1 840,553 - HMPREF1058_RS09590 0.29 +0.2 840,559 + HMPREF1058_RS09590 0.30 +0.6 840,595 - HMPREF1058_RS09590 0.39 -3.6 840,595 - HMPREF1058_RS09590 0.39 -0.8 840,640 + HMPREF1058_RS09590 0.50 +0.3 840,739 + HMPREF1058_RS09590 0.75 +0.8 840,739 + HMPREF1058_RS09590 0.75 -1.2 840,757 + HMPREF1058_RS09590 0.79 -1.4 840,763 + HMPREF1058_RS09590 0.80 -0.6 840,763 + HMPREF1058_RS09590 0.80 -0.4 840,763 + HMPREF1058_RS09590 0.80 -0.0 840,855 + -3.0 840,903 - +1.6 840,944 - -3.0 840,962 + -2.0 840,962 + -4.1 840,982 - -0.8 840,999 + HMPREF1058_RS09585 0.11 -2.4 841,035 - HMPREF1058_RS09585 0.13 -2.4 841,046 + HMPREF1058_RS09585 0.14 -2.5 841,053 + HMPREF1058_RS09585 0.15 -2.4 841,057 + HMPREF1058_RS09585 0.15 -2.9 841,057 + HMPREF1058_RS09585 0.15 -2.3 841,057 + HMPREF1058_RS09585 0.15 -2.0 841,057 + HMPREF1058_RS09585 0.15 -2.5 841,058 - HMPREF1058_RS09585 0.15 -1.8 841,109 + HMPREF1058_RS09585 0.19 -2.3 841,110 - HMPREF1058_RS09585 0.19 -2.8 841,121 + HMPREF1058_RS09585 0.20 -2.9 841,219 - HMPREF1058_RS09585 0.27 -1.4 841,290 + HMPREF1058_RS09585 0.32 -2.6 841,291 - HMPREF1058_RS09585 0.32 -2.5 841,291 - HMPREF1058_RS09585 0.32 -4.8 841,294 + HMPREF1058_RS09585 0.33 -2.2 841,294 + HMPREF1058_RS09585 0.33 +0.1 841,295 - HMPREF1058_RS09585 0.33 -2.5 841,295 - HMPREF1058_RS09585 0.33 -0.3 841,295 - HMPREF1058_RS09585 0.33 -2.0 841,296 + HMPREF1058_RS09585 0.33 -1.8 841,296 + HMPREF1058_RS09585 0.33 -3.0 841,296 + HMPREF1058_RS09585 0.33 -2.5 841,297 - HMPREF1058_RS09585 0.33 -0.8 841,297 - HMPREF1058_RS09585 0.33 -3.6 841,526 - HMPREF1058_RS09585 0.50 -2.6 841,527 + HMPREF1058_RS09585 0.50 -2.5 841,527 + HMPREF1058_RS09585 0.50 -2.7 841,527 + HMPREF1058_RS09585 0.50 -3.6 841,528 - HMPREF1058_RS09585 0.50 -3.4 841,528 - HMPREF1058_RS09585 0.50 -0.9 841,537 + HMPREF1058_RS09585 0.51 -3.7 841,537 + HMPREF1058_RS09585 0.51 -1.9 841,558 - HMPREF1058_RS09585 0.52 -2.8 841,632 + HMPREF1058_RS09585 0.58 +0.1 841,632 + HMPREF1058_RS09585 0.58 -1.4 841,696 - HMPREF1058_RS09585 0.63 -0.6 841,697 + HMPREF1058_RS09585 0.63 -2.1 841,832 + HMPREF1058_RS09585 0.73 -3.4 841,891 + HMPREF1058_RS09585 0.77 -3.4 841,893 + HMPREF1058_RS09585 0.77 -3.1 841,893 + HMPREF1058_RS09585 0.77 -2.7 841,894 - HMPREF1058_RS09585 0.77 -2.6 841,924 - HMPREF1058_RS09585 0.80 -1.4 841,924 - HMPREF1058_RS09585 0.80 -3.9 841,948 + HMPREF1058_RS09585 0.81 -0.3 841,948 + HMPREF1058_RS09585 0.81 -4.0 841,948 + HMPREF1058_RS09585 0.81 -1.8 841,948 + HMPREF1058_RS09585 0.81 -3.1 841,949 - HMPREF1058_RS09585 0.82 -3.3 841,957 - HMPREF1058_RS09585 0.82 -2.8 842,014 - HMPREF1058_RS09585 0.86 -3.7 842,033 + HMPREF1058_RS09585 0.88 -3.2 842,033 + HMPREF1058_RS09585 0.88 -2.5 842,034 - -0.2 842,074 - -3.9 842,074 - -2.8 842,085 + -0.7 842,187 - -3.1 842,200 + -0.8 842,213 + -0.8 842,226 + +0.6 842,227 - -0.1 842,268 + +0.4 842,301 - -0.2 842,321 + HMPREF1058_RS09580 0.10 +0.4 842,366 + HMPREF1058_RS09580 0.15 +0.1 842,367 - HMPREF1058_RS09580 0.15 -1.4 842,411 + HMPREF1058_RS09580 0.19 -0.1 842,412 - HMPREF1058_RS09580 0.19 -0.1 842,499 - HMPREF1058_RS09580 0.28 +0.2 842,499 - HMPREF1058_RS09580 0.28 -1.4 842,610 + HMPREF1058_RS09580 0.39 +0.1 842,620 + HMPREF1058_RS09580 0.40 +0.8 842,620 + HMPREF1058_RS09580 0.40 +0.6 842,626 - HMPREF1058_RS09580 0.41 -0.9 842,627 + HMPREF1058_RS09580 0.41 +0.4 842,628 - HMPREF1058_RS09580 0.41 +1.7 842,687 - HMPREF1058_RS09580 0.47 +2.1 842,687 - HMPREF1058_RS09580 0.47 -0.3 842,709 + HMPREF1058_RS09580 0.49 +0.5 842,709 + HMPREF1058_RS09580 0.49 +0.0 842,709 + HMPREF1058_RS09580 0.49 -0.2 842,710 - HMPREF1058_RS09580 0.49 +0.5 842,807 + HMPREF1058_RS09580 0.59 +0.9 842,807 + HMPREF1058_RS09580 0.59 +0.7 842,807 + HMPREF1058_RS09580 0.59 +0.3 842,810 + HMPREF1058_RS09580 0.59 +0.4 842,811 - +0.4 842,811 - HMPREF1058_RS09580 0.60 -0.6 842,873 + HMPREF1058_RS09580 0.66 +0.6 842,912 + HMPREF1058_RS09580 0.70 +0.4
Or see this region's nucleotide sequence