Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09010 and HMPREF1058_RS09005 are separated by 204 nucleotides HMPREF1058_RS09005 and HMPREF1058_RS09000 are separated by 28 nucleotides HMPREF1058_RS09000 and HMPREF1058_RS08995 are separated by 17 nucleotides
HMPREF1058_RS09010: HMPREF1058_RS09010 - GH92 family glycosyl hydrolase, at 963,834 to 966,056
_RS09010
HMPREF1058_RS09005: HMPREF1058_RS09005 - RNA polymerase sigma-70 factor, at 966,261 to 966,836
_RS09005
HMPREF1058_RS09000: HMPREF1058_RS09000 - FecR domain-containing protein, at 966,865 to 967,857
_RS09000
HMPREF1058_RS08995: HMPREF1058_RS08995 - GH92 family glycosyl hydrolase, at 967,875 to 970,157
_RS08995
Position (kb) 966
967
968 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 965.897 kb on - strand at 965.929 kb on - strand at 965.948 kb on - strand at 965.973 kb on + strand at 965.973 kb on + strand at 965.973 kb on + strand at 965.976 kb on - strand at 966.050 kb on + strand at 966.054 kb on + strand at 966.054 kb on + strand at 966.061 kb on + strand at 966.062 kb on - strand at 966.062 kb on - strand at 966.062 kb on - strand at 966.078 kb on + strand at 966.116 kb on + strand at 966.241 kb on - strand at 966.256 kb on - strand at 966.285 kb on + strand at 966.286 kb on - strand at 966.286 kb on - strand at 966.314 kb on + strand at 966.455 kb on - strand, within HMPREF1058_RS09005 at 966.455 kb on - strand, within HMPREF1058_RS09005 at 966.455 kb on - strand, within HMPREF1058_RS09005 at 966.467 kb on - strand, within HMPREF1058_RS09005 at 966.638 kb on + strand, within HMPREF1058_RS09005 at 966.644 kb on + strand, within HMPREF1058_RS09005 at 966.722 kb on + strand, within HMPREF1058_RS09005 at 966.737 kb on + strand, within HMPREF1058_RS09005 at 966.737 kb on + strand, within HMPREF1058_RS09005 at 966.737 kb on + strand, within HMPREF1058_RS09005 at 966.738 kb on - strand, within HMPREF1058_RS09005 at 966.738 kb on - strand, within HMPREF1058_RS09005 at 966.742 kb on - strand, within HMPREF1058_RS09005 at 966.781 kb on + strand at 966.782 kb on - strand at 966.785 kb on - strand at 966.827 kb on + strand at 966.849 kb on - strand at 966.892 kb on - strand at 966.893 kb on + strand at 966.893 kb on + strand at 966.894 kb on - strand at 966.899 kb on - strand at 967.114 kb on - strand, within HMPREF1058_RS09000 at 967.114 kb on - strand, within HMPREF1058_RS09000 at 967.269 kb on - strand, within HMPREF1058_RS09000 at 967.331 kb on + strand, within HMPREF1058_RS09000 at 967.331 kb on + strand, within HMPREF1058_RS09000 at 967.332 kb on - strand, within HMPREF1058_RS09000 at 967.352 kb on - strand, within HMPREF1058_RS09000 at 967.438 kb on - strand, within HMPREF1058_RS09000 at 967.438 kb on - strand, within HMPREF1058_RS09000 at 967.439 kb on + strand at 967.557 kb on - strand, within HMPREF1058_RS09000 at 967.651 kb on - strand, within HMPREF1058_RS09000 at 967.716 kb on - strand, within HMPREF1058_RS09000 at 967.716 kb on - strand, within HMPREF1058_RS09000 at 967.716 kb on - strand, within HMPREF1058_RS09000 at 967.722 kb on + strand, within HMPREF1058_RS09000 at 967.759 kb on - strand at 967.761 kb on + strand at 967.761 kb on + strand at 967.762 kb on - strand at 967.763 kb on + strand at 967.763 kb on + strand at 967.764 kb on - strand at 967.810 kb on - strand at 967.836 kb on + strand at 967.962 kb on + strand at 967.972 kb on - strand at 967.985 kb on + strand at 968.009 kb on + strand at 968.098 kb on - strand at 968.101 kb on - strand at 968.111 kb on + strand, within HMPREF1058_RS08995 at 968.271 kb on + strand, within HMPREF1058_RS08995 at 968.289 kb on + strand, within HMPREF1058_RS08995 at 968.306 kb on + strand, within HMPREF1058_RS08995 at 968.311 kb on - strand, within HMPREF1058_RS08995 at 968.311 kb on - strand, within HMPREF1058_RS08995 at 968.378 kb on + strand, within HMPREF1058_RS08995 at 968.378 kb on + strand, within HMPREF1058_RS08995 at 968.378 kb on + strand, within HMPREF1058_RS08995 at 968.379 kb on - strand, within HMPREF1058_RS08995 at 968.411 kb on + strand, within HMPREF1058_RS08995 at 968.411 kb on + strand, within HMPREF1058_RS08995 at 968.411 kb on + strand, within HMPREF1058_RS08995 at 968.415 kb on - strand, within HMPREF1058_RS08995 at 968.462 kb on + strand, within HMPREF1058_RS08995 at 968.462 kb on + strand, within HMPREF1058_RS08995 at 968.547 kb on - strand, within HMPREF1058_RS08995 at 968.550 kb on + strand, within HMPREF1058_RS08995 at 968.551 kb on - strand, within HMPREF1058_RS08995 at 968.552 kb on + strand, within HMPREF1058_RS08995 at 968.600 kb on - strand, within HMPREF1058_RS08995 at 968.604 kb on - strand, within HMPREF1058_RS08995 at 968.604 kb on - strand, within HMPREF1058_RS08995 at 968.661 kb on - strand, within HMPREF1058_RS08995 at 968.689 kb on - strand, within HMPREF1058_RS08995 at 968.828 kb on + strand, within HMPREF1058_RS08995
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 965,897 - -0.2 965,929 - +0.3 965,948 - -0.1 965,973 + +0.1 965,973 + +0.1 965,973 + -0.3 965,976 - +0.3 966,050 + -0.0 966,054 + +1.3 966,054 + +0.1 966,061 + -1.5 966,062 - -0.1 966,062 - -1.1 966,062 - -0.9 966,078 + +0.1 966,116 + +0.3 966,241 - +0.1 966,256 - -0.8 966,285 + -0.9 966,286 - +0.0 966,286 - -1.3 966,314 + +0.5 966,455 - HMPREF1058_RS09005 0.34 +2.0 966,455 - HMPREF1058_RS09005 0.34 -0.3 966,455 - HMPREF1058_RS09005 0.34 +1.0 966,467 - HMPREF1058_RS09005 0.36 -0.1 966,638 + HMPREF1058_RS09005 0.65 -1.1 966,644 + HMPREF1058_RS09005 0.66 -0.7 966,722 + HMPREF1058_RS09005 0.80 -0.2 966,737 + HMPREF1058_RS09005 0.83 +0.3 966,737 + HMPREF1058_RS09005 0.83 -0.6 966,737 + HMPREF1058_RS09005 0.83 +0.2 966,738 - HMPREF1058_RS09005 0.83 +0.2 966,738 - HMPREF1058_RS09005 0.83 -1.8 966,742 - HMPREF1058_RS09005 0.84 +0.2 966,781 + -0.2 966,782 - +0.5 966,785 - -0.6 966,827 + +0.3 966,849 - -2.6 966,892 - -1.8 966,893 + +0.1 966,893 + -1.7 966,894 - -0.9 966,899 - -0.2 967,114 - HMPREF1058_RS09000 0.25 -1.3 967,114 - HMPREF1058_RS09000 0.25 -2.3 967,269 - HMPREF1058_RS09000 0.41 -1.9 967,331 + HMPREF1058_RS09000 0.47 -1.1 967,331 + HMPREF1058_RS09000 0.47 -0.4 967,332 - HMPREF1058_RS09000 0.47 -0.8 967,352 - HMPREF1058_RS09000 0.49 -0.9 967,438 - HMPREF1058_RS09000 0.58 -3.9 967,438 - HMPREF1058_RS09000 0.58 +1.7 967,439 + -0.6 967,557 - HMPREF1058_RS09000 0.70 -2.1 967,651 - HMPREF1058_RS09000 0.79 -1.4 967,716 - HMPREF1058_RS09000 0.86 -1.6 967,716 - HMPREF1058_RS09000 0.86 -0.9 967,716 - HMPREF1058_RS09000 0.86 -1.3 967,722 + HMPREF1058_RS09000 0.86 -0.1 967,759 - -0.4 967,761 + -1.5 967,761 + -0.9 967,762 - -0.4 967,763 + -0.0 967,763 + -0.2 967,764 - -2.7 967,810 - -1.4 967,836 + -0.5 967,962 + -0.9 967,972 - +0.6 967,985 + -1.5 968,009 + -0.8 968,098 - -1.1 968,101 - +0.3 968,111 + HMPREF1058_RS08995 0.10 -0.9 968,271 + HMPREF1058_RS08995 0.17 -0.3 968,289 + HMPREF1058_RS08995 0.18 -0.4 968,306 + HMPREF1058_RS08995 0.19 -1.2 968,311 - HMPREF1058_RS08995 0.19 -0.0 968,311 - HMPREF1058_RS08995 0.19 -0.6 968,378 + HMPREF1058_RS08995 0.22 -0.3 968,378 + HMPREF1058_RS08995 0.22 -0.6 968,378 + HMPREF1058_RS08995 0.22 +1.2 968,379 - HMPREF1058_RS08995 0.22 -1.0 968,411 + HMPREF1058_RS08995 0.23 -0.6 968,411 + HMPREF1058_RS08995 0.23 +0.7 968,411 + HMPREF1058_RS08995 0.23 -0.0 968,415 - HMPREF1058_RS08995 0.24 +0.6 968,462 + HMPREF1058_RS08995 0.26 +0.8 968,462 + HMPREF1058_RS08995 0.26 -0.8 968,547 - HMPREF1058_RS08995 0.29 -1.0 968,550 + HMPREF1058_RS08995 0.30 +1.3 968,551 - HMPREF1058_RS08995 0.30 -1.3 968,552 + HMPREF1058_RS08995 0.30 +2.2 968,600 - HMPREF1058_RS08995 0.32 +1.2 968,604 - HMPREF1058_RS08995 0.32 -0.1 968,604 - HMPREF1058_RS08995 0.32 +1.0 968,661 - HMPREF1058_RS08995 0.34 -0.6 968,689 - HMPREF1058_RS08995 0.36 -0.9 968,828 + HMPREF1058_RS08995 0.42 -0.4
Or see this region's nucleotide sequence