Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08645

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
1,082,847	+		HMPREF1058_RS08650	0.24	-2.5
1,082,974	+		HMPREF1058_RS08650	0.36	-3.6
1,082,975	-		HMPREF1058_RS08650	0.36	-3.6
1,082,983	+		HMPREF1058_RS08650	0.37	-4.2
1,083,085	+		HMPREF1058_RS08650	0.46	-3.6
1,083,096	-		HMPREF1058_RS08650	0.47	-1.9
1,083,106	+		HMPREF1058_RS08650	0.48	-3.0
1,083,107	-		HMPREF1058_RS08650	0.48	-2.9
1,083,108	+		HMPREF1058_RS08650	0.48	-2.1
1,083,108	+		HMPREF1058_RS08650	0.48	-2.8
1,083,108	+		HMPREF1058_RS08650	0.48	-2.7
1,083,108	+		HMPREF1058_RS08650	0.48	-0.2
1,083,109	-		HMPREF1058_RS08650	0.49	-1.2
1,083,180	+		HMPREF1058_RS08650	0.55	-1.9
1,083,269	+		HMPREF1058_RS08650	0.63	-2.8
1,083,300	-		HMPREF1058_RS08650	0.66	-2.1
1,083,527	+		HMPREF1058_RS08650	0.87	-1.0
1,083,528	-		HMPREF1058_RS08650	0.87	-3.0
1,083,530	-		HMPREF1058_RS08650	0.87	-2.6
1,083,637	+				-3.3
1,083,637	+				-2.3
1,083,637	+				-2.8
1,083,638	-				-4.9
1,083,638	-				-4.8
1,083,638	-				-3.5
1,083,638	-				-4.5
1,083,638	-				-0.6
1,083,638	-				-3.5
1,083,642	+				-1.9
1,083,648	+				-2.3
1,083,714	-				-2.6
1,083,793	+				-1.4
1,083,793	+				-4.2
1,084,022	+		HMPREF1058_RS08645	0.25	-1.4
1,084,069	-		HMPREF1058_RS08645	0.29	-2.7
1,084,069	-		HMPREF1058_RS08645	0.29	-3.4
1,084,119	+		HMPREF1058_RS08645	0.33	-3.9
1,084,119	+		HMPREF1058_RS08645	0.33	-4.0
1,084,120	-		HMPREF1058_RS08645	0.33	-3.3
1,084,120	-		HMPREF1058_RS08645	0.33	-3.0
1,084,183	-		HMPREF1058_RS08645	0.38	-2.3
1,084,316	+		HMPREF1058_RS08645	0.49	-3.0
1,084,316	+		HMPREF1058_RS08645	0.49	-2.0
1,084,316	+		HMPREF1058_RS08645	0.49	-3.5
1,084,322	-		HMPREF1058_RS08645	0.49	-2.6
1,084,481	+		HMPREF1058_RS08645	0.62	-0.1
1,084,482	-		HMPREF1058_RS08645	0.62	-1.4
1,084,550	-		HMPREF1058_RS08645	0.68	-3.3
1,084,569	+		HMPREF1058_RS08645	0.69	-3.3
1,084,570	-		HMPREF1058_RS08645	0.69	+0.8
1,084,574	-		HMPREF1058_RS08645	0.69	-2.8
1,084,617	+		HMPREF1058_RS08645	0.73	-0.6
1,084,709	-		HMPREF1058_RS08645	0.80	-0.9
1,084,723	-		HMPREF1058_RS08645	0.81	-3.5
1,084,723	-		HMPREF1058_RS08645	0.81	-3.4
1,084,731	+		HMPREF1058_RS08645	0.82	+0.1
1,084,732	-		HMPREF1058_RS08645	0.82	-3.1
1,084,732	-		HMPREF1058_RS08645	0.82	-1.9
1,084,767	+		HMPREF1058_RS08645	0.85	-2.4
1,084,768	-		HMPREF1058_RS08645	0.85	-3.5
1,084,854	-				-1.9
1,084,915	+				-1.7
1,084,915	+				+0.1
1,084,916	-				-3.9
1,084,916	-				-3.4
1,084,946	+				-3.8
1,084,960	+				+0.6
1,084,962	+				+0.6
1,084,963	-				-2.5
1,084,995	+				-4.0
1,084,996	-				-3.6
1,084,996	-				-3.3
1,085,059	+				-1.3
1,085,060	-				-1.7
1,085,060	-				-4.1
1,085,064	-				-2.6
1,085,264	-		HMPREF1058_RS08640	0.30	-3.6
1,085,671	+		HMPREF1058_RS08640	0.72	-5.5
1,085,858	-				-2.1