Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08030 and HMPREF1058_RS08025 are separated by 242 nucleotides
HMPREF1058_RS08030: HMPREF1058_RS08030 - peptide chain release factor 1, at 70,060 to 71,175
_RS08030
HMPREF1058_RS08025: HMPREF1058_RS08025 - phosphoribosylformylglycinamidine cyclo-ligase, at 71,418 to 72,587
_RS08025
Position (kb) 71
72
73 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 71.252 kb on - strand at 71.259 kb on - strand at 71.330 kb on - strand at 71.334 kb on - strand at 71.343 kb on - strand at 71.405 kb on - strand at 71.558 kb on - strand, within HMPREF1058_RS08025 at 71.583 kb on - strand, within HMPREF1058_RS08025 at 71.583 kb on - strand, within HMPREF1058_RS08025 at 71.587 kb on - strand, within HMPREF1058_RS08025 at 71.881 kb on - strand, within HMPREF1058_RS08025 at 71.906 kb on - strand, within HMPREF1058_RS08025 at 72.005 kb on - strand, within HMPREF1058_RS08025 at 72.005 kb on - strand, within HMPREF1058_RS08025 at 72.009 kb on - strand, within HMPREF1058_RS08025 at 72.034 kb on - strand, within HMPREF1058_RS08025 at 72.034 kb on - strand, within HMPREF1058_RS08025 at 72.112 kb on - strand, within HMPREF1058_RS08025 at 72.112 kb on - strand, within HMPREF1058_RS08025 at 72.253 kb on - strand, within HMPREF1058_RS08025 at 72.258 kb on - strand, within HMPREF1058_RS08025 at 72.258 kb on - strand, within HMPREF1058_RS08025 at 72.291 kb on - strand, within HMPREF1058_RS08025 at 72.367 kb on - strand, within HMPREF1058_RS08025 at 72.414 kb on - strand, within HMPREF1058_RS08025 at 72.597 kb on - strand at 72.631 kb on - strand at 72.631 kb on - strand at 72.698 kb on - strand at 72.698 kb on - strand at 72.726 kb on + strand at 72.758 kb on + strand at 72.758 kb on + strand at 72.758 kb on + strand at 72.762 kb on + strand at 72.762 kb on + strand at 72.781 kb on + strand at 72.786 kb on + strand at 72.791 kb on + strand at 72.796 kb on - strand at 72.798 kb on - strand at 72.802 kb on + strand at 72.803 kb on - strand at 72.818 kb on + strand at 72.821 kb on - strand at 72.846 kb on - strand at 72.886 kb on + strand at 73.018 kb on + strand at 73.018 kb on + strand at 73.061 kb on - strand at 73.080 kb on + strand at 73.081 kb on - strand at 73.238 kb on + strand at 73.239 kb on - strand at 73.239 kb on - strand at 73.291 kb on + strand at 73.357 kb on + strand at 73.506 kb on + strand at 73.539 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 71,252 - +0.5 71,259 - +1.3 71,330 - +1.6 71,334 - +1.1 71,343 - +1.1 71,405 - +1.4 71,558 - HMPREF1058_RS08025 0.12 -2.8 71,583 - HMPREF1058_RS08025 0.14 +0.4 71,583 - HMPREF1058_RS08025 0.14 -1.7 71,587 - HMPREF1058_RS08025 0.14 +0.2 71,881 - HMPREF1058_RS08025 0.40 -2.3 71,906 - HMPREF1058_RS08025 0.42 -4.3 72,005 - HMPREF1058_RS08025 0.50 -3.5 72,005 - HMPREF1058_RS08025 0.50 +1.7 72,009 - HMPREF1058_RS08025 0.51 +2.7 72,034 - HMPREF1058_RS08025 0.53 -4.1 72,034 - HMPREF1058_RS08025 0.53 -0.9 72,112 - HMPREF1058_RS08025 0.59 -1.5 72,112 - HMPREF1058_RS08025 0.59 -1.6 72,253 - HMPREF1058_RS08025 0.71 -2.4 72,258 - HMPREF1058_RS08025 0.72 -1.4 72,258 - HMPREF1058_RS08025 0.72 -1.0 72,291 - HMPREF1058_RS08025 0.75 +0.2 72,367 - HMPREF1058_RS08025 0.81 -3.1 72,414 - HMPREF1058_RS08025 0.85 -3.4 72,597 - -0.6 72,631 - -0.1 72,631 - +0.7 72,698 - +0.7 72,698 - +0.3 72,726 + -1.1 72,758 + -0.5 72,758 + +0.3 72,758 + +0.0 72,762 + -0.1 72,762 + +0.2 72,781 + -0.7 72,786 + -0.9 72,791 + -1.1 72,796 - +1.4 72,798 - +2.4 72,802 + -1.0 72,803 - +0.6 72,818 + -0.2 72,821 - +1.6 72,846 - +0.2 72,886 + -0.6 73,018 + +0.7 73,018 + -0.8 73,061 - +0.1 73,080 + -0.3 73,081 - +2.3 73,238 + -0.4 73,239 - -0.1 73,239 - +0.2 73,291 + +3.7 73,357 + -0.8 73,506 + -1.5 73,539 - -1.0
Or see this region's nucleotide sequence