Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07840

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
120,458	+		HMPREF1058_RS0119730	0.30	-0.5
120,487	+		HMPREF1058_RS0119730	0.33	-0.6
120,676	-		HMPREF1058_RS0119730	0.52	-1.0
120,854	-		HMPREF1058_RS0119730	0.70	-0.0
120,915	+		HMPREF1058_RS0119730	0.76	+0.1
120,915	+		HMPREF1058_RS0119730	0.76	+2.7
120,933	+		HMPREF1058_RS0119730	0.78	-0.4
121,042	-		HMPREF1058_RS0119730	0.89	-0.1
121,052	+		HMPREF1058_RS0119730	0.90	-3.2
121,081	+				+0.7
121,082	-				-1.5
121,086	+				+0.2
121,098	+				-2.0
121,119	-				+0.7
121,119	-				+0.6
121,168	-				-1.0
121,168	-				+0.7
121,171	-				-0.1
121,202	-				+0.5
121,202	-				-1.2
121,225	-				+1.3
121,242	-				+0.8
121,242	-				-0.3
121,251	-				+0.8
121,333	+				-2.5
121,374	-				-0.4
121,441	+		HMPREF1058_RS07840	0.15	-0.6
121,547	+		HMPREF1058_RS07840	0.63	-1.3
121,547	+		HMPREF1058_RS07840	0.63	-1.0
121,548	-		HMPREF1058_RS07840	0.64	-1.1
121,577	+		HMPREF1058_RS07840	0.77	+0.1
121,610	-				-1.1
121,627	-				-0.7
121,638	+				-0.3
121,639	-				-1.1
121,657	+				-0.8
121,657	+				-0.2
121,658	-				-2.8
121,815	-		HMPREF1058_RS07835	0.21	-0.2
121,819	+		HMPREF1058_RS07835	0.22	+2.7
121,823	+		HMPREF1058_RS07835	0.22	+0.7
121,824	-		HMPREF1058_RS07835	0.22	-1.6
121,824	-		HMPREF1058_RS07835	0.22	-1.6
121,824	-		HMPREF1058_RS07835	0.22	-0.4
122,142	+		HMPREF1058_RS07835	0.59	+1.0
122,212	+		HMPREF1058_RS07835	0.67	+1.6
122,212	+		HMPREF1058_RS07835	0.67	-0.3
122,221	+		HMPREF1058_RS07835	0.68	+0.7
122,221	+		HMPREF1058_RS07835	0.68	+0.1
122,302	+		HMPREF1058_RS07835	0.78	+0.5
122,303	-		HMPREF1058_RS07835	0.78	+0.7
122,304	+		HMPREF1058_RS07835	0.78	-0.1
122,316	-		HMPREF1058_RS07835	0.79	+0.1
122,345	+		HMPREF1058_RS07835	0.83	-0.6
122,346	-		HMPREF1058_RS07835	0.83	-0.2