Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07660 and HMPREF1058_RS07655 are separated by 139 nucleotides HMPREF1058_RS07655 and HMPREF1058_RS07650 are separated by 108 nucleotides HMPREF1058_RS07650 and HMPREF1058_RS07645 are separated by 209 nucleotides
HMPREF1058_RS07660: HMPREF1058_RS07660 - IS1182 family transposase, at 168,057 to 169,712
_RS07660
HMPREF1058_RS07655: HMPREF1058_RS07655 - hypothetical protein, at 169,852 to 170,034
_RS07655
HMPREF1058_RS07650: HMPREF1058_RS07650 - MarR family transcriptional regulator, at 170,143 to 170,589
_RS07650
HMPREF1058_RS07645: HMPREF1058_RS07645 - 30S ribosomal protein S6, at 170,799 to 171,143
_RS07645
Position (kb) 169
170
171 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 169.847 kb on - strand at 169.848 kb on + strand at 169.882 kb on - strand, within HMPREF1058_RS07655 at 170.011 kb on + strand, within HMPREF1058_RS07655 at 170.052 kb on - strand at 170.052 kb on - strand at 170.063 kb on - strand at 170.087 kb on - strand at 170.165 kb on - strand at 170.165 kb on - strand at 170.174 kb on - strand at 170.177 kb on - strand at 170.296 kb on + strand, within HMPREF1058_RS07650 at 170.391 kb on + strand, within HMPREF1058_RS07650 at 170.403 kb on + strand, within HMPREF1058_RS07650 at 170.408 kb on - strand, within HMPREF1058_RS07650 at 170.408 kb on - strand, within HMPREF1058_RS07650 at 170.542 kb on + strand, within HMPREF1058_RS07650 at 170.554 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 169,847 - +0.4 169,848 + -1.0 169,882 - HMPREF1058_RS07655 0.16 -2.6 170,011 + HMPREF1058_RS07655 0.87 -3.9 170,052 - -0.4 170,052 - -2.7 170,063 - -0.1 170,087 - -3.4 170,165 - +0.4 170,165 - +0.8 170,174 - +1.7 170,177 - -0.1 170,296 + HMPREF1058_RS07650 0.34 -2.0 170,391 + HMPREF1058_RS07650 0.55 -0.7 170,403 + HMPREF1058_RS07650 0.58 -0.5 170,408 - HMPREF1058_RS07650 0.59 +0.9 170,408 - HMPREF1058_RS07650 0.59 -0.6 170,542 + HMPREF1058_RS07650 0.89 -0.2 170,554 + +0.3
Or see this region's nucleotide sequence