Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07550 and HMPREF1058_RS07545 are separated by 278 nucleotides HMPREF1058_RS07545 and HMPREF1058_RS07540 are separated by 21 nucleotides HMPREF1058_RS07540 and HMPREF1058_RS07535 are separated by 14 nucleotides
HMPREF1058_RS07550: HMPREF1058_RS07550 - alpha/beta hydrolase, at 192,978 to 194,033
_RS07550
HMPREF1058_RS07545: HMPREF1058_RS07545 - hypothetical protein, at 194,312 to 194,491
_RS07545
HMPREF1058_RS07540: HMPREF1058_RS07540 - acetyltransferase, at 194,513 to 195,088
_RS07540
HMPREF1058_RS07535: HMPREF1058_RS07535 - hypothetical protein, at 195,103 to 195,390
_RS07535
Position (kb) 194
195 Strain fitness (log2 ratio) -1
0
1 at 193.357 kb on + strand, within HMPREF1058_RS07550 at 193.477 kb on + strand, within HMPREF1058_RS07550 at 193.506 kb on - strand, within HMPREF1058_RS07550 at 193.741 kb on + strand, within HMPREF1058_RS07550 at 193.764 kb on + strand, within HMPREF1058_RS07550 at 194.159 kb on - strand at 194.301 kb on + strand at 194.312 kb on - strand at 194.373 kb on - strand, within HMPREF1058_RS07545 at 194.448 kb on - strand, within HMPREF1058_RS07545 at 194.490 kb on - strand at 194.666 kb on + strand, within HMPREF1058_RS07540 at 194.666 kb on + strand, within HMPREF1058_RS07540 at 194.854 kb on + strand, within HMPREF1058_RS07540 at 194.855 kb on - strand, within HMPREF1058_RS07540 at 195.080 kb on + strand at 195.081 kb on - strand at 195.088 kb on + strand at 195.089 kb on - strand at 195.107 kb on - strand at 195.125 kb on + strand at 195.200 kb on - strand, within HMPREF1058_RS07535 at 195.290 kb on + strand, within HMPREF1058_RS07535 at 195.291 kb on - strand, within HMPREF1058_RS07535 at 195.291 kb on - strand, within HMPREF1058_RS07535 at 195.346 kb on + strand, within HMPREF1058_RS07535 at 195.356 kb on - strand, within HMPREF1058_RS07535 at 195.381 kb on + strand at 195.381 kb on + strand at 195.491 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 193,357 + HMPREF1058_RS07550 0.36 +1.4 193,477 + HMPREF1058_RS07550 0.47 -0.3 193,506 - HMPREF1058_RS07550 0.50 -0.3 193,741 + HMPREF1058_RS07550 0.72 -0.3 193,764 + HMPREF1058_RS07550 0.74 -0.9 194,159 - +0.2 194,301 + +0.1 194,312 - +0.2 194,373 - HMPREF1058_RS07545 0.34 -1.2 194,448 - HMPREF1058_RS07545 0.76 -1.5 194,490 - -0.6 194,666 + HMPREF1058_RS07540 0.27 -1.4 194,666 + HMPREF1058_RS07540 0.27 -0.5 194,854 + HMPREF1058_RS07540 0.59 +0.7 194,855 - HMPREF1058_RS07540 0.59 +1.1 195,080 + -0.6 195,081 - +0.7 195,088 + -0.1 195,089 - +1.1 195,107 - +1.3 195,125 + +1.7 195,200 - HMPREF1058_RS07535 0.34 -1.4 195,290 + HMPREF1058_RS07535 0.65 -1.6 195,291 - HMPREF1058_RS07535 0.65 +0.4 195,291 - HMPREF1058_RS07535 0.65 +1.0 195,346 + HMPREF1058_RS07535 0.84 -1.4 195,356 - HMPREF1058_RS07535 0.88 +0.1 195,381 + +0.3 195,381 + -0.4 195,491 + +0.6
Or see this region's nucleotide sequence