Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07450 and HMPREF1058_RS07445 are separated by 89 nucleotides HMPREF1058_RS07445 and HMPREF1058_RS07440 are separated by 117 nucleotides HMPREF1058_RS07440 and HMPREF1058_RS07435 are separated by 202 nucleotides HMPREF1058_RS07435 and HMPREF1058_RS07430 are separated by 311 nucleotides
HMPREF1058_RS07450: HMPREF1058_RS07450 - LPS-assembly protein LptD, at 220,960 to 223,695
_RS07450
HMPREF1058_RS07445: HMPREF1058_RS07445 - uracil-DNA glycosylase, at 223,785 to 224,447
_RS07445
HMPREF1058_RS07440: HMPREF1058_RS07440 - aspartate--ammonia ligase, at 224,565 to 225,605
_RS07440
HMPREF1058_RS07435: HMPREF1058_RS07435 - tRNA-Arg, at 225,808 to 225,879
_RS07435
HMPREF1058_RS07430: HMPREF1058_RS07430 - TonB-dependent receptor, at 226,191 to 229,466
_RS07430
Position (kb) 224
225
226 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 223.694 kb on - strand at 223.780 kb on + strand at 223.781 kb on - strand at 223.867 kb on + strand, within HMPREF1058_RS07445 at 223.867 kb on + strand, within HMPREF1058_RS07445 at 223.968 kb on + strand, within HMPREF1058_RS07445 at 223.969 kb on - strand, within HMPREF1058_RS07445 at 223.974 kb on - strand, within HMPREF1058_RS07445 at 224.016 kb on - strand, within HMPREF1058_RS07445 at 224.088 kb on + strand, within HMPREF1058_RS07445 at 224.088 kb on + strand, within HMPREF1058_RS07445 at 224.172 kb on - strand, within HMPREF1058_RS07445 at 224.316 kb on - strand, within HMPREF1058_RS07445 at 224.336 kb on + strand, within HMPREF1058_RS07445 at 224.361 kb on + strand, within HMPREF1058_RS07445 at 224.433 kb on + strand at 224.434 kb on - strand at 224.460 kb on - strand at 224.509 kb on - strand at 224.560 kb on + strand at 224.563 kb on - strand at 224.621 kb on + strand at 224.640 kb on + strand at 224.686 kb on - strand, within HMPREF1058_RS07440 at 224.686 kb on - strand, within HMPREF1058_RS07440 at 224.860 kb on - strand, within HMPREF1058_RS07440 at 224.910 kb on - strand at 224.972 kb on + strand, within HMPREF1058_RS07440 at 224.977 kb on - strand, within HMPREF1058_RS07440 at 224.977 kb on - strand, within HMPREF1058_RS07440 at 224.981 kb on + strand, within HMPREF1058_RS07440 at 224.982 kb on - strand, within HMPREF1058_RS07440 at 224.985 kb on + strand, within HMPREF1058_RS07440 at 225.044 kb on - strand, within HMPREF1058_RS07440 at 225.044 kb on - strand at 225.123 kb on + strand, within HMPREF1058_RS07440 at 225.128 kb on + strand, within HMPREF1058_RS07440 at 225.129 kb on - strand, within HMPREF1058_RS07440 at 225.159 kb on - strand, within HMPREF1058_RS07440 at 225.168 kb on + strand, within HMPREF1058_RS07440 at 225.168 kb on + strand, within HMPREF1058_RS07440 at 225.169 kb on - strand, within HMPREF1058_RS07440 at 225.234 kb on + strand, within HMPREF1058_RS07440 at 225.239 kb on - strand, within HMPREF1058_RS07440 at 225.239 kb on - strand, within HMPREF1058_RS07440 at 225.239 kb on - strand, within HMPREF1058_RS07440 at 225.240 kb on + strand, within HMPREF1058_RS07440 at 225.240 kb on + strand, within HMPREF1058_RS07440 at 225.317 kb on + strand, within HMPREF1058_RS07440 at 225.322 kb on + strand, within HMPREF1058_RS07440 at 225.395 kb on + strand, within HMPREF1058_RS07440 at 225.493 kb on - strand at 225.577 kb on + strand at 225.620 kb on - strand at 225.704 kb on + strand at 225.928 kb on + strand at 225.930 kb on + strand at 226.042 kb on + strand at 226.062 kb on - strand at 226.083 kb on - strand at 226.216 kb on + strand at 226.276 kb on + strand at 226.276 kb on + strand at 226.276 kb on + strand at 226.365 kb on - strand at 226.365 kb on - strand at 226.405 kb on - strand at 226.406 kb on + strand at 226.407 kb on - strand at 226.408 kb on + strand at 226.409 kb on - strand at 226.452 kb on + strand at 226.570 kb on + strand, within HMPREF1058_RS07430 at 226.573 kb on + strand, within HMPREF1058_RS07430 at 226.586 kb on + strand, within HMPREF1058_RS07430
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 223,694 - -0.7 223,780 + -0.0 223,781 - +0.9 223,867 + HMPREF1058_RS07445 0.12 +0.1 223,867 + HMPREF1058_RS07445 0.12 -0.9 223,968 + HMPREF1058_RS07445 0.28 +2.9 223,969 - HMPREF1058_RS07445 0.28 -0.8 223,974 - HMPREF1058_RS07445 0.29 +0.4 224,016 - HMPREF1058_RS07445 0.35 -0.5 224,088 + HMPREF1058_RS07445 0.46 +0.4 224,088 + HMPREF1058_RS07445 0.46 +0.8 224,172 - HMPREF1058_RS07445 0.58 -2.3 224,316 - HMPREF1058_RS07445 0.80 +0.2 224,336 + HMPREF1058_RS07445 0.83 -1.7 224,361 + HMPREF1058_RS07445 0.87 +1.8 224,433 + -0.7 224,434 - +1.8 224,460 - +0.7 224,509 - -0.7 224,560 + -0.8 224,563 - +2.1 224,621 + -0.9 224,640 + -1.6 224,686 - HMPREF1058_RS07440 0.12 -2.0 224,686 - HMPREF1058_RS07440 0.12 -2.0 224,860 - HMPREF1058_RS07440 0.28 +1.7 224,910 - -1.0 224,972 + HMPREF1058_RS07440 0.39 -3.3 224,977 - HMPREF1058_RS07440 0.40 -2.2 224,977 - HMPREF1058_RS07440 0.40 -2.2 224,981 + HMPREF1058_RS07440 0.40 +0.2 224,982 - HMPREF1058_RS07440 0.40 -1.4 224,985 + HMPREF1058_RS07440 0.40 -2.2 225,044 - HMPREF1058_RS07440 0.46 -1.0 225,044 - +0.7 225,123 + HMPREF1058_RS07440 0.54 -1.7 225,128 + HMPREF1058_RS07440 0.54 -1.2 225,129 - HMPREF1058_RS07440 0.54 +2.7 225,159 - HMPREF1058_RS07440 0.57 -0.1 225,168 + HMPREF1058_RS07440 0.58 -2.5 225,168 + HMPREF1058_RS07440 0.58 -0.3 225,169 - HMPREF1058_RS07440 0.58 -2.9 225,234 + HMPREF1058_RS07440 0.64 -2.1 225,239 - HMPREF1058_RS07440 0.65 -0.8 225,239 - HMPREF1058_RS07440 0.65 -3.1 225,239 - HMPREF1058_RS07440 0.65 -0.2 225,240 + HMPREF1058_RS07440 0.65 +0.7 225,240 + HMPREF1058_RS07440 0.65 -1.1 225,317 + HMPREF1058_RS07440 0.72 +0.9 225,322 + HMPREF1058_RS07440 0.73 +0.5 225,395 + HMPREF1058_RS07440 0.80 +0.1 225,493 - -0.5 225,577 + -3.2 225,620 - -2.3 225,704 + -0.8 225,928 + -0.3 225,930 + -0.3 226,042 + -0.5 226,062 - -0.2 226,083 - -1.0 226,216 + +1.1 226,276 + +0.1 226,276 + +1.5 226,276 + +1.1 226,365 - +1.1 226,365 - +1.2 226,405 - -0.2 226,406 + -1.2 226,407 - +0.2 226,408 + -0.4 226,409 - +0.7 226,452 + -1.1 226,570 + HMPREF1058_RS07430 0.12 +1.2 226,573 + HMPREF1058_RS07430 0.12 -0.5 226,586 + HMPREF1058_RS07430 0.12 +0.4
Or see this region's nucleotide sequence