Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07200 and HMPREF1058_RS07195 overlap by 4 nucleotides HMPREF1058_RS07195 and HMPREF1058_RS07190 are separated by 12 nucleotides HMPREF1058_RS07190 and HMPREF1058_RS07185 are separated by 38 nucleotides
HMPREF1058_RS07200: HMPREF1058_RS07200 - tryptophan synthase subunit alpha, at 290,212 to 290,988
_RS07200
HMPREF1058_RS07195: HMPREF1058_RS07195 - phosphoribosylanthranilate isomerase, at 290,985 to 291,602
_RS07195
HMPREF1058_RS07190: HMPREF1058_RS07190 - indole-3-glycerol phosphate synthase TrpC, at 291,615 to 292,403
_RS07190
HMPREF1058_RS07185: HMPREF1058_RS07185 - anthranilate phosphoribosyltransferase, at 292,442 to 293,437
_RS07185
Position (kb) 290
291
292 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 290.034 kb on + strand at 290.035 kb on - strand at 290.083 kb on - strand at 290.115 kb on - strand at 290.116 kb on + strand at 290.117 kb on - strand at 290.123 kb on - strand at 290.136 kb on - strand at 290.196 kb on + strand at 290.197 kb on - strand at 290.292 kb on + strand, within HMPREF1058_RS07200 at 290.365 kb on + strand, within HMPREF1058_RS07200 at 290.365 kb on + strand, within HMPREF1058_RS07200 at 290.365 kb on + strand, within HMPREF1058_RS07200 at 290.366 kb on - strand, within HMPREF1058_RS07200 at 290.411 kb on + strand, within HMPREF1058_RS07200 at 290.467 kb on + strand, within HMPREF1058_RS07200 at 290.468 kb on - strand, within HMPREF1058_RS07200 at 290.474 kb on + strand, within HMPREF1058_RS07200 at 290.475 kb on - strand, within HMPREF1058_RS07200 at 290.475 kb on - strand, within HMPREF1058_RS07200 at 290.475 kb on - strand, within HMPREF1058_RS07200 at 290.479 kb on - strand, within HMPREF1058_RS07200 at 290.595 kb on - strand, within HMPREF1058_RS07200 at 290.723 kb on - strand, within HMPREF1058_RS07200 at 290.863 kb on - strand, within HMPREF1058_RS07200 at 290.908 kb on + strand, within HMPREF1058_RS07200 at 290.908 kb on + strand, within HMPREF1058_RS07200 at 291.015 kb on - strand at 291.173 kb on - strand, within HMPREF1058_RS07195 at 291.248 kb on - strand, within HMPREF1058_RS07195 at 291.257 kb on + strand, within HMPREF1058_RS07195 at 291.340 kb on - strand, within HMPREF1058_RS07195 at 291.384 kb on - strand, within HMPREF1058_RS07195 at 291.496 kb on + strand, within HMPREF1058_RS07195 at 291.589 kb on - strand at 291.638 kb on + strand at 291.877 kb on - strand, within HMPREF1058_RS07190 at 291.877 kb on - strand, within HMPREF1058_RS07190 at 291.879 kb on - strand, within HMPREF1058_RS07190 at 291.879 kb on - strand, within HMPREF1058_RS07190 at 291.879 kb on - strand, within HMPREF1058_RS07190 at 291.880 kb on + strand, within HMPREF1058_RS07190 at 291.881 kb on - strand, within HMPREF1058_RS07190 at 292.041 kb on + strand, within HMPREF1058_RS07190 at 292.042 kb on - strand, within HMPREF1058_RS07190 at 292.185 kb on - strand, within HMPREF1058_RS07190 at 292.393 kb on - strand at 292.393 kb on - strand at 292.557 kb on - strand at 292.557 kb on - strand, within HMPREF1058_RS07185
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 290,034 + +1.4 290,035 - +0.1 290,083 - -1.5 290,115 - -0.9 290,116 + -2.3 290,117 - -1.2 290,123 - +0.8 290,136 - -0.9 290,196 + +1.2 290,197 - +0.9 290,292 + HMPREF1058_RS07200 0.10 -2.5 290,365 + HMPREF1058_RS07200 0.20 -0.6 290,365 + HMPREF1058_RS07200 0.20 -0.7 290,365 + HMPREF1058_RS07200 0.20 +0.2 290,366 - HMPREF1058_RS07200 0.20 -2.9 290,411 + HMPREF1058_RS07200 0.26 -2.6 290,467 + HMPREF1058_RS07200 0.33 -0.2 290,468 - HMPREF1058_RS07200 0.33 -1.8 290,474 + HMPREF1058_RS07200 0.34 -2.1 290,475 - HMPREF1058_RS07200 0.34 -3.3 290,475 - HMPREF1058_RS07200 0.34 -1.5 290,475 - HMPREF1058_RS07200 0.34 -2.7 290,479 - HMPREF1058_RS07200 0.34 -3.0 290,595 - HMPREF1058_RS07200 0.49 -3.2 290,723 - HMPREF1058_RS07200 0.66 -2.4 290,863 - HMPREF1058_RS07200 0.84 -4.1 290,908 + HMPREF1058_RS07200 0.90 -4.0 290,908 + HMPREF1058_RS07200 0.90 -3.9 291,015 - -3.5 291,173 - HMPREF1058_RS07195 0.30 -1.5 291,248 - HMPREF1058_RS07195 0.43 -2.4 291,257 + HMPREF1058_RS07195 0.44 -1.0 291,340 - HMPREF1058_RS07195 0.57 -2.4 291,384 - HMPREF1058_RS07195 0.65 -2.7 291,496 + HMPREF1058_RS07195 0.83 +1.3 291,589 - -3.7 291,638 + -0.9 291,877 - HMPREF1058_RS07190 0.33 +0.7 291,877 - HMPREF1058_RS07190 0.33 -2.7 291,879 - HMPREF1058_RS07190 0.33 -2.6 291,879 - HMPREF1058_RS07190 0.33 -1.2 291,879 - HMPREF1058_RS07190 0.33 -1.7 291,880 + HMPREF1058_RS07190 0.34 -3.1 291,881 - HMPREF1058_RS07190 0.34 -3.0 292,041 + HMPREF1058_RS07190 0.54 -2.1 292,042 - HMPREF1058_RS07190 0.54 -3.1 292,185 - HMPREF1058_RS07190 0.72 -2.3 292,393 - -0.5 292,393 - -4.2 292,557 - +1.9 292,557 - HMPREF1058_RS07185 0.12 -3.7
Or see this region's nucleotide sequence