Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07185 and HMPREF1058_RS07180 are separated by 21 nucleotides HMPREF1058_RS07180 and HMPREF1058_RS07175 are separated by 12 nucleotides HMPREF1058_RS07175 and HMPREF1058_RS07170 are separated by 60 nucleotides
HMPREF1058_RS07185: HMPREF1058_RS07185 - anthranilate phosphoribosyltransferase, at 292,442 to 293,437
_RS07185
HMPREF1058_RS07180: HMPREF1058_RS07180 - aminodeoxychorismate/anthranilate synthase component II, at 293,459 to 294,049
_RS07180
HMPREF1058_RS07175: HMPREF1058_RS07175 - anthranilate synthase component I family protein, at 294,062 to 295,462
_RS07175
HMPREF1058_RS07170: HMPREF1058_RS07170 - tryptophan synthase subunit beta, at 295,523 to 296,722
_RS07170
Position (kb) 294
295
296 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 293.106 kb on + strand, within HMPREF1058_RS07185 at 293.164 kb on + strand, within HMPREF1058_RS07185 at 293.180 kb on - strand, within HMPREF1058_RS07185 at 293.237 kb on + strand, within HMPREF1058_RS07185 at 293.346 kb on + strand at 293.445 kb on - strand at 293.445 kb on - strand at 293.448 kb on + strand at 293.448 kb on + strand at 293.551 kb on + strand, within HMPREF1058_RS07180 at 293.686 kb on - strand, within HMPREF1058_RS07180 at 293.744 kb on + strand, within HMPREF1058_RS07180 at 293.745 kb on - strand, within HMPREF1058_RS07180 at 293.756 kb on + strand, within HMPREF1058_RS07180 at 293.756 kb on + strand, within HMPREF1058_RS07180 at 293.820 kb on - strand, within HMPREF1058_RS07180 at 293.820 kb on - strand, within HMPREF1058_RS07180 at 293.820 kb on - strand, within HMPREF1058_RS07180 at 293.855 kb on - strand, within HMPREF1058_RS07180 at 293.960 kb on + strand, within HMPREF1058_RS07180 at 293.963 kb on + strand, within HMPREF1058_RS07180 at 294.014 kb on - strand at 294.025 kb on - strand at 294.025 kb on - strand at 294.025 kb on - strand at 294.025 kb on - strand at 294.039 kb on - strand at 294.125 kb on + strand at 294.148 kb on + strand at 294.149 kb on - strand at 294.153 kb on - strand at 294.205 kb on + strand, within HMPREF1058_RS07175 at 294.205 kb on + strand, within HMPREF1058_RS07175 at 294.206 kb on - strand, within HMPREF1058_RS07175 at 294.317 kb on + strand, within HMPREF1058_RS07175 at 294.318 kb on - strand, within HMPREF1058_RS07175 at 294.361 kb on + strand, within HMPREF1058_RS07175 at 294.362 kb on - strand, within HMPREF1058_RS07175 at 294.510 kb on - strand, within HMPREF1058_RS07175 at 294.518 kb on + strand, within HMPREF1058_RS07175 at 294.518 kb on + strand, within HMPREF1058_RS07175 at 294.766 kb on - strand at 294.908 kb on - strand, within HMPREF1058_RS07175 at 294.912 kb on + strand, within HMPREF1058_RS07175 at 294.912 kb on + strand, within HMPREF1058_RS07175 at 294.913 kb on - strand, within HMPREF1058_RS07175 at 294.913 kb on - strand, within HMPREF1058_RS07175 at 294.913 kb on - strand, within HMPREF1058_RS07175 at 294.917 kb on - strand, within HMPREF1058_RS07175 at 295.027 kb on + strand, within HMPREF1058_RS07175 at 295.031 kb on + strand, within HMPREF1058_RS07175 at 295.037 kb on - strand, within HMPREF1058_RS07175 at 295.038 kb on + strand at 295.038 kb on + strand, within HMPREF1058_RS07175 at 295.039 kb on - strand, within HMPREF1058_RS07175 at 295.039 kb on - strand, within HMPREF1058_RS07175 at 295.082 kb on + strand, within HMPREF1058_RS07175 at 295.126 kb on - strand, within HMPREF1058_RS07175 at 295.397 kb on - strand at 295.408 kb on + strand at 295.446 kb on + strand at 295.447 kb on - strand at 295.480 kb on + strand at 295.481 kb on - strand at 295.561 kb on - strand at 295.607 kb on + strand at 295.607 kb on + strand at 295.607 kb on + strand at 295.608 kb on - strand at 295.829 kb on + strand, within HMPREF1058_RS07170 at 295.927 kb on + strand, within HMPREF1058_RS07170 at 295.977 kb on - strand, within HMPREF1058_RS07170 at 295.979 kb on - strand, within HMPREF1058_RS07170 at 295.980 kb on + strand, within HMPREF1058_RS07170 at 295.986 kb on + strand, within HMPREF1058_RS07170 at 296.019 kb on - strand, within HMPREF1058_RS07170 at 296.035 kb on - strand, within HMPREF1058_RS07170 at 296.117 kb on - strand, within HMPREF1058_RS07170 at 296.158 kb on - strand, within HMPREF1058_RS07170 at 296.158 kb on - strand, within HMPREF1058_RS07170 at 296.160 kb on + strand, within HMPREF1058_RS07170 at 296.160 kb on + strand, within HMPREF1058_RS07170 at 296.161 kb on - strand, within HMPREF1058_RS07170 at 296.284 kb on + strand, within HMPREF1058_RS07170 at 296.316 kb on + strand, within HMPREF1058_RS07170 at 296.316 kb on + strand, within HMPREF1058_RS07170 at 296.317 kb on - strand, within HMPREF1058_RS07170 at 296.413 kb on + strand, within HMPREF1058_RS07170
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 293,106 + HMPREF1058_RS07185 0.67 -1.8 293,164 + HMPREF1058_RS07185 0.72 -1.4 293,180 - HMPREF1058_RS07185 0.74 -1.0 293,237 + HMPREF1058_RS07185 0.80 -2.5 293,346 + -2.5 293,445 - -1.5 293,445 - -0.8 293,448 + -1.5 293,448 + -4.0 293,551 + HMPREF1058_RS07180 0.16 -2.8 293,686 - HMPREF1058_RS07180 0.38 -1.1 293,744 + HMPREF1058_RS07180 0.48 -1.7 293,745 - HMPREF1058_RS07180 0.48 -1.2 293,756 + HMPREF1058_RS07180 0.50 -2.0 293,756 + HMPREF1058_RS07180 0.50 +2.7 293,820 - HMPREF1058_RS07180 0.61 -0.9 293,820 - HMPREF1058_RS07180 0.61 -0.1 293,820 - HMPREF1058_RS07180 0.61 -3.5 293,855 - HMPREF1058_RS07180 0.67 -2.3 293,960 + HMPREF1058_RS07180 0.85 -0.8 293,963 + HMPREF1058_RS07180 0.85 -1.2 294,014 - -2.4 294,025 - +0.1 294,025 - -2.4 294,025 - -3.3 294,025 - -3.5 294,039 - -2.5 294,125 + -3.2 294,148 + -2.1 294,149 - -2.0 294,153 - -1.9 294,205 + HMPREF1058_RS07175 0.10 -3.7 294,205 + HMPREF1058_RS07175 0.10 -1.7 294,206 - HMPREF1058_RS07175 0.10 -3.3 294,317 + HMPREF1058_RS07175 0.18 -1.7 294,318 - HMPREF1058_RS07175 0.18 -1.1 294,361 + HMPREF1058_RS07175 0.21 -1.5 294,362 - HMPREF1058_RS07175 0.21 +1.7 294,510 - HMPREF1058_RS07175 0.32 -2.8 294,518 + HMPREF1058_RS07175 0.33 -3.3 294,518 + HMPREF1058_RS07175 0.33 +0.7 294,766 - +0.1 294,908 - HMPREF1058_RS07175 0.60 -4.2 294,912 + HMPREF1058_RS07175 0.61 -2.6 294,912 + HMPREF1058_RS07175 0.61 -1.6 294,913 - HMPREF1058_RS07175 0.61 -3.2 294,913 - HMPREF1058_RS07175 0.61 -1.7 294,913 - HMPREF1058_RS07175 0.61 -0.1 294,917 - HMPREF1058_RS07175 0.61 -3.0 295,027 + HMPREF1058_RS07175 0.69 -1.4 295,031 + HMPREF1058_RS07175 0.69 -1.3 295,037 - HMPREF1058_RS07175 0.70 -2.7 295,038 + -0.1 295,038 + HMPREF1058_RS07175 0.70 +2.7 295,039 - HMPREF1058_RS07175 0.70 -3.0 295,039 - HMPREF1058_RS07175 0.70 -1.8 295,082 + HMPREF1058_RS07175 0.73 -1.1 295,126 - HMPREF1058_RS07175 0.76 -2.7 295,397 - +0.1 295,408 + -1.8 295,446 + -3.1 295,447 - -1.2 295,480 + +0.1 295,481 - -1.8 295,561 - +0.9 295,607 + -3.9 295,607 + -1.9 295,607 + -4.4 295,608 - -0.7 295,829 + HMPREF1058_RS07170 0.26 -0.5 295,927 + HMPREF1058_RS07170 0.34 -0.9 295,977 - HMPREF1058_RS07170 0.38 -2.9 295,979 - HMPREF1058_RS07170 0.38 -0.3 295,980 + HMPREF1058_RS07170 0.38 -2.9 295,986 + HMPREF1058_RS07170 0.39 -1.0 296,019 - HMPREF1058_RS07170 0.41 -4.3 296,035 - HMPREF1058_RS07170 0.43 -4.4 296,117 - HMPREF1058_RS07170 0.49 -2.5 296,158 - HMPREF1058_RS07170 0.53 -2.0 296,158 - HMPREF1058_RS07170 0.53 -3.4 296,160 + HMPREF1058_RS07170 0.53 +0.9 296,160 + HMPREF1058_RS07170 0.53 -3.1 296,161 - HMPREF1058_RS07170 0.53 -1.9 296,284 + HMPREF1058_RS07170 0.63 -2.6 296,316 + HMPREF1058_RS07170 0.66 -3.5 296,316 + HMPREF1058_RS07170 0.66 -2.6 296,317 - HMPREF1058_RS07170 0.66 -3.4 296,413 + HMPREF1058_RS07170 0.74 -3.5
Or see this region's nucleotide sequence