Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06355 and HMPREF1058_RS06350 are separated by 178 nucleotides HMPREF1058_RS06350 and HMPREF1058_RS06345 are separated by 20 nucleotides HMPREF1058_RS06345 and HMPREF1058_RS06340 are separated by 40 nucleotides
HMPREF1058_RS06355: HMPREF1058_RS06355 - threonine ammonia-lyase, at 500,066 to 501,262
_RS06355
HMPREF1058_RS06350: HMPREF1058_RS06350 - SoxR reducing system RseC family protein, at 501,441 to 501,869
_RS06350
HMPREF1058_RS06345: HMPREF1058_RS06345 - Fe-S cluster domain-containing protein, at 501,890 to 502,843
_RS06345
HMPREF1058_RS06340: HMPREF1058_RS06340 - electron transport complex subunit RsxC, at 502,884 to 504,221
_RS06340
Position (kb) 501
502
503 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 500.929 kb on - strand, within HMPREF1058_RS06355 at 500.942 kb on - strand, within HMPREF1058_RS06355 at 501.031 kb on + strand, within HMPREF1058_RS06355 at 501.031 kb on + strand, within HMPREF1058_RS06355 at 501.032 kb on - strand, within HMPREF1058_RS06355 at 501.209 kb on - strand at 501.375 kb on + strand at 501.378 kb on - strand at 501.385 kb on - strand at 501.385 kb on - strand at 501.385 kb on - strand at 501.452 kb on - strand at 501.537 kb on - strand, within HMPREF1058_RS06350 at 501.640 kb on - strand, within HMPREF1058_RS06350 at 501.710 kb on + strand, within HMPREF1058_RS06350 at 501.716 kb on - strand, within HMPREF1058_RS06350 at 501.719 kb on + strand, within HMPREF1058_RS06350 at 501.752 kb on - strand, within HMPREF1058_RS06350 at 501.801 kb on - strand, within HMPREF1058_RS06350 at 501.802 kb on + strand, within HMPREF1058_RS06350 at 501.802 kb on + strand, within HMPREF1058_RS06350 at 501.803 kb on - strand, within HMPREF1058_RS06350 at 501.803 kb on - strand, within HMPREF1058_RS06350 at 501.805 kb on - strand, within HMPREF1058_RS06350 at 501.805 kb on - strand, within HMPREF1058_RS06350 at 501.805 kb on - strand, within HMPREF1058_RS06350 at 501.809 kb on - strand, within HMPREF1058_RS06350 at 501.842 kb on + strand at 502.119 kb on + strand, within HMPREF1058_RS06345 at 502.120 kb on - strand, within HMPREF1058_RS06345 at 502.120 kb on - strand, within HMPREF1058_RS06345 at 502.155 kb on + strand, within HMPREF1058_RS06345 at 502.157 kb on - strand, within HMPREF1058_RS06345 at 502.222 kb on + strand, within HMPREF1058_RS06345 at 502.561 kb on + strand, within HMPREF1058_RS06345 at 502.606 kb on + strand, within HMPREF1058_RS06345 at 502.606 kb on + strand, within HMPREF1058_RS06345 at 502.628 kb on + strand, within HMPREF1058_RS06345 at 502.729 kb on - strand, within HMPREF1058_RS06345 at 502.773 kb on + strand at 502.857 kb on + strand at 502.857 kb on + strand at 503.047 kb on + strand, within HMPREF1058_RS06340 at 503.048 kb on - strand, within HMPREF1058_RS06340 at 503.126 kb on - strand, within HMPREF1058_RS06340 at 503.284 kb on + strand, within HMPREF1058_RS06340 at 503.285 kb on - strand, within HMPREF1058_RS06340 at 503.364 kb on - strand, within HMPREF1058_RS06340 at 503.374 kb on + strand, within HMPREF1058_RS06340 at 503.375 kb on - strand, within HMPREF1058_RS06340 at 503.612 kb on - strand, within HMPREF1058_RS06340 at 503.612 kb on - strand, within HMPREF1058_RS06340 at 503.686 kb on + strand, within HMPREF1058_RS06340 at 503.686 kb on + strand, within HMPREF1058_RS06340 at 503.687 kb on - strand, within HMPREF1058_RS06340 at 503.687 kb on - strand, within HMPREF1058_RS06340
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 500,929 - HMPREF1058_RS06355 0.72 -0.4 500,942 - HMPREF1058_RS06355 0.73 -1.1 501,031 + HMPREF1058_RS06355 0.81 +0.2 501,031 + HMPREF1058_RS06355 0.81 -0.2 501,032 - HMPREF1058_RS06355 0.81 -1.9 501,209 - +0.8 501,375 + +0.2 501,378 - -0.2 501,385 - -1.2 501,385 - +0.8 501,385 - -0.9 501,452 - -1.7 501,537 - HMPREF1058_RS06350 0.22 +1.1 501,640 - HMPREF1058_RS06350 0.46 -0.4 501,710 + HMPREF1058_RS06350 0.63 -1.2 501,716 - HMPREF1058_RS06350 0.64 -1.7 501,719 + HMPREF1058_RS06350 0.65 -1.9 501,752 - HMPREF1058_RS06350 0.72 -0.4 501,801 - HMPREF1058_RS06350 0.84 -1.6 501,802 + HMPREF1058_RS06350 0.84 +1.5 501,802 + HMPREF1058_RS06350 0.84 +2.6 501,803 - HMPREF1058_RS06350 0.84 -1.4 501,803 - HMPREF1058_RS06350 0.84 -1.4 501,805 - HMPREF1058_RS06350 0.85 -1.9 501,805 - HMPREF1058_RS06350 0.85 -1.6 501,805 - HMPREF1058_RS06350 0.85 -2.2 501,809 - HMPREF1058_RS06350 0.86 -0.9 501,842 + -2.9 502,119 + HMPREF1058_RS06345 0.24 -2.2 502,120 - HMPREF1058_RS06345 0.24 +0.3 502,120 - HMPREF1058_RS06345 0.24 -2.5 502,155 + HMPREF1058_RS06345 0.28 -0.4 502,157 - HMPREF1058_RS06345 0.28 -0.9 502,222 + HMPREF1058_RS06345 0.35 -0.7 502,561 + HMPREF1058_RS06345 0.70 -0.2 502,606 + HMPREF1058_RS06345 0.75 -0.9 502,606 + HMPREF1058_RS06345 0.75 -1.7 502,628 + HMPREF1058_RS06345 0.77 -1.9 502,729 - HMPREF1058_RS06345 0.88 -1.4 502,773 + +0.1 502,857 + +0.6 502,857 + -2.5 503,047 + HMPREF1058_RS06340 0.12 -1.4 503,048 - HMPREF1058_RS06340 0.12 -1.2 503,126 - HMPREF1058_RS06340 0.18 -0.9 503,284 + HMPREF1058_RS06340 0.30 -0.4 503,285 - HMPREF1058_RS06340 0.30 -0.1 503,364 - HMPREF1058_RS06340 0.36 -1.7 503,374 + HMPREF1058_RS06340 0.37 -1.9 503,375 - HMPREF1058_RS06340 0.37 -1.4 503,612 - HMPREF1058_RS06340 0.54 -0.4 503,612 - HMPREF1058_RS06340 0.54 +2.6 503,686 + HMPREF1058_RS06340 0.60 +1.6 503,686 + HMPREF1058_RS06340 0.60 -2.7 503,687 - HMPREF1058_RS06340 0.60 -1.7 503,687 - HMPREF1058_RS06340 0.60 +0.8
Or see this region's nucleotide sequence