Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06345 and HMPREF1058_RS06340 are separated by 40 nucleotides HMPREF1058_RS06340 and HMPREF1058_RS06335 are separated by 14 nucleotides
HMPREF1058_RS06345: HMPREF1058_RS06345 - Fe-S cluster domain-containing protein, at 501,890 to 502,843
_RS06345
HMPREF1058_RS06340: HMPREF1058_RS06340 - electron transport complex subunit RsxC, at 502,884 to 504,221
_RS06340
HMPREF1058_RS06335: HMPREF1058_RS06335 - RnfABCDGE type electron transport complex subunit D, at 504,236 to 505,225
_RS06335
Position (kb) 502
503
504
505 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 502.119 kb on + strand, within HMPREF1058_RS06345 at 502.120 kb on - strand, within HMPREF1058_RS06345 at 502.120 kb on - strand, within HMPREF1058_RS06345 at 502.155 kb on + strand, within HMPREF1058_RS06345 at 502.157 kb on - strand, within HMPREF1058_RS06345 at 502.222 kb on + strand, within HMPREF1058_RS06345 at 502.561 kb on + strand, within HMPREF1058_RS06345 at 502.606 kb on + strand, within HMPREF1058_RS06345 at 502.606 kb on + strand, within HMPREF1058_RS06345 at 502.628 kb on + strand, within HMPREF1058_RS06345 at 502.729 kb on - strand, within HMPREF1058_RS06345 at 502.773 kb on + strand at 502.857 kb on + strand at 502.857 kb on + strand at 503.047 kb on + strand, within HMPREF1058_RS06340 at 503.048 kb on - strand, within HMPREF1058_RS06340 at 503.126 kb on - strand, within HMPREF1058_RS06340 at 503.284 kb on + strand, within HMPREF1058_RS06340 at 503.285 kb on - strand, within HMPREF1058_RS06340 at 503.364 kb on - strand, within HMPREF1058_RS06340 at 503.374 kb on + strand, within HMPREF1058_RS06340 at 503.375 kb on - strand, within HMPREF1058_RS06340 at 503.612 kb on - strand, within HMPREF1058_RS06340 at 503.612 kb on - strand, within HMPREF1058_RS06340 at 503.686 kb on + strand, within HMPREF1058_RS06340 at 503.686 kb on + strand, within HMPREF1058_RS06340 at 503.687 kb on - strand, within HMPREF1058_RS06340 at 503.687 kb on - strand, within HMPREF1058_RS06340 at 503.921 kb on + strand, within HMPREF1058_RS06340 at 503.922 kb on - strand, within HMPREF1058_RS06340 at 504.094 kb on + strand at 504.094 kb on + strand at 504.095 kb on - strand at 504.095 kb on - strand at 504.128 kb on + strand at 504.160 kb on - strand at 504.220 kb on - strand at 504.236 kb on - strand at 504.236 kb on - strand at 504.236 kb on - strand at 504.250 kb on - strand at 504.252 kb on + strand at 504.255 kb on + strand at 504.291 kb on + strand at 504.291 kb on + strand at 504.292 kb on - strand at 504.301 kb on + strand at 504.302 kb on - strand at 504.302 kb on - strand at 504.305 kb on + strand at 504.306 kb on - strand at 504.306 kb on - strand at 504.327 kb on + strand at 504.454 kb on + strand, within HMPREF1058_RS06335 at 504.478 kb on + strand, within HMPREF1058_RS06335 at 504.480 kb on + strand, within HMPREF1058_RS06335 at 504.481 kb on - strand, within HMPREF1058_RS06335 at 504.692 kb on + strand, within HMPREF1058_RS06335 at 504.715 kb on + strand, within HMPREF1058_RS06335 at 504.766 kb on - strand, within HMPREF1058_RS06335 at 504.786 kb on + strand, within HMPREF1058_RS06335 at 504.786 kb on + strand, within HMPREF1058_RS06335 at 504.787 kb on - strand, within HMPREF1058_RS06335 at 504.787 kb on - strand, within HMPREF1058_RS06335 at 504.819 kb on + strand, within HMPREF1058_RS06335 at 504.862 kb on + strand, within HMPREF1058_RS06335 at 504.862 kb on + strand, within HMPREF1058_RS06335 at 504.862 kb on + strand, within HMPREF1058_RS06335 at 504.862 kb on + strand, within HMPREF1058_RS06335 at 504.862 kb on + strand, within HMPREF1058_RS06335 at 504.862 kb on + strand, within HMPREF1058_RS06335 at 504.863 kb on - strand, within HMPREF1058_RS06335 at 504.863 kb on - strand, within HMPREF1058_RS06335 at 504.863 kb on - strand, within HMPREF1058_RS06335 at 504.901 kb on - strand, within HMPREF1058_RS06335 at 504.919 kb on - strand, within HMPREF1058_RS06335 at 504.919 kb on - strand, within HMPREF1058_RS06335 at 504.988 kb on + strand, within HMPREF1058_RS06335 at 504.988 kb on + strand, within HMPREF1058_RS06335 at 505.031 kb on + strand, within HMPREF1058_RS06335 at 505.031 kb on + strand, within HMPREF1058_RS06335 at 505.036 kb on + strand, within HMPREF1058_RS06335 at 505.036 kb on + strand, within HMPREF1058_RS06335 at 505.036 kb on + strand, within HMPREF1058_RS06335 at 505.037 kb on - strand, within HMPREF1058_RS06335 at 505.037 kb on - strand, within HMPREF1058_RS06335 at 505.054 kb on + strand, within HMPREF1058_RS06335 at 505.067 kb on - strand, within HMPREF1058_RS06335 at 505.067 kb on - strand, within HMPREF1058_RS06335 at 505.133 kb on - strand at 505.147 kb on - strand at 505.184 kb on + strand at 505.189 kb on + strand at 505.195 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 502,119 + HMPREF1058_RS06345 0.24 -2.2 502,120 - HMPREF1058_RS06345 0.24 +0.3 502,120 - HMPREF1058_RS06345 0.24 -2.5 502,155 + HMPREF1058_RS06345 0.28 -0.4 502,157 - HMPREF1058_RS06345 0.28 -0.9 502,222 + HMPREF1058_RS06345 0.35 -0.7 502,561 + HMPREF1058_RS06345 0.70 -0.2 502,606 + HMPREF1058_RS06345 0.75 -0.9 502,606 + HMPREF1058_RS06345 0.75 -1.7 502,628 + HMPREF1058_RS06345 0.77 -1.9 502,729 - HMPREF1058_RS06345 0.88 -1.4 502,773 + +0.1 502,857 + +0.6 502,857 + -2.5 503,047 + HMPREF1058_RS06340 0.12 -1.4 503,048 - HMPREF1058_RS06340 0.12 -1.2 503,126 - HMPREF1058_RS06340 0.18 -0.9 503,284 + HMPREF1058_RS06340 0.30 -0.4 503,285 - HMPREF1058_RS06340 0.30 -0.1 503,364 - HMPREF1058_RS06340 0.36 -1.7 503,374 + HMPREF1058_RS06340 0.37 -1.9 503,375 - HMPREF1058_RS06340 0.37 -1.4 503,612 - HMPREF1058_RS06340 0.54 -0.4 503,612 - HMPREF1058_RS06340 0.54 +2.6 503,686 + HMPREF1058_RS06340 0.60 +1.6 503,686 + HMPREF1058_RS06340 0.60 -2.7 503,687 - HMPREF1058_RS06340 0.60 -1.7 503,687 - HMPREF1058_RS06340 0.60 +0.8 503,921 + HMPREF1058_RS06340 0.78 -0.7 503,922 - HMPREF1058_RS06340 0.78 +0.6 504,094 + -2.1 504,094 + -0.2 504,095 - -0.5 504,095 - +0.3 504,128 + +1.1 504,160 - -2.3 504,220 - -2.8 504,236 - +0.3 504,236 - -0.8 504,236 - -2.0 504,250 - +0.6 504,252 + -1.3 504,255 + -0.2 504,291 + -1.2 504,291 + -1.3 504,292 - +0.4 504,301 + -2.1 504,302 - -0.4 504,302 - -1.1 504,305 + -1.1 504,306 - -0.7 504,306 - -1.1 504,327 + -0.5 504,454 + HMPREF1058_RS06335 0.22 -2.9 504,478 + HMPREF1058_RS06335 0.24 -2.4 504,480 + HMPREF1058_RS06335 0.25 -1.3 504,481 - HMPREF1058_RS06335 0.25 -2.5 504,692 + HMPREF1058_RS06335 0.46 -0.9 504,715 + HMPREF1058_RS06335 0.48 +0.8 504,766 - HMPREF1058_RS06335 0.54 +0.6 504,786 + HMPREF1058_RS06335 0.56 -3.0 504,786 + HMPREF1058_RS06335 0.56 -1.4 504,787 - HMPREF1058_RS06335 0.56 -1.4 504,787 - HMPREF1058_RS06335 0.56 -2.5 504,819 + HMPREF1058_RS06335 0.59 -0.0 504,862 + HMPREF1058_RS06335 0.63 -1.3 504,862 + HMPREF1058_RS06335 0.63 +0.1 504,862 + HMPREF1058_RS06335 0.63 -0.7 504,862 + HMPREF1058_RS06335 0.63 -0.4 504,862 + HMPREF1058_RS06335 0.63 +0.1 504,862 + HMPREF1058_RS06335 0.63 -1.4 504,863 - HMPREF1058_RS06335 0.63 -1.7 504,863 - HMPREF1058_RS06335 0.63 +0.6 504,863 - HMPREF1058_RS06335 0.63 -0.8 504,901 - HMPREF1058_RS06335 0.67 -1.1 504,919 - HMPREF1058_RS06335 0.69 -1.5 504,919 - HMPREF1058_RS06335 0.69 +0.1 504,988 + HMPREF1058_RS06335 0.76 -0.8 504,988 + HMPREF1058_RS06335 0.76 -2.1 505,031 + HMPREF1058_RS06335 0.80 -1.1 505,031 + HMPREF1058_RS06335 0.80 -0.5 505,036 + HMPREF1058_RS06335 0.81 -0.4 505,036 + HMPREF1058_RS06335 0.81 -0.8 505,036 + HMPREF1058_RS06335 0.81 -1.5 505,037 - HMPREF1058_RS06335 0.81 -1.1 505,037 - HMPREF1058_RS06335 0.81 -1.9 505,054 + HMPREF1058_RS06335 0.83 -0.9 505,067 - HMPREF1058_RS06335 0.84 +0.6 505,067 - HMPREF1058_RS06335 0.84 -1.0 505,133 - +0.1 505,147 - -0.7 505,184 + +0.2 505,189 + +1.3 505,195 + -0.2
Or see this region's nucleotide sequence