Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS06320

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS06330 and HMPREF1058_RS06325 are separated by 14 nucleotidesHMPREF1058_RS06325 and HMPREF1058_RS06320 are separated by 18 nucleotidesHMPREF1058_RS06320 and HMPREF1058_RS06315 are separated by 141 nucleotides HMPREF1058_RS06330: HMPREF1058_RS06330 - RnfABCDGE type electron transport complex subunit G, at 505,222 to 506,016 _RS06330 HMPREF1058_RS06325: HMPREF1058_RS06325 - electron transport complex subunit E, at 506,031 to 506,615 _RS06325 HMPREF1058_RS06320: HMPREF1058_RS06320 - electron transport complex subunit RsxA, at 506,634 to 507,236 _RS06320 HMPREF1058_RS06315: HMPREF1058_RS06315 - hypothetical protein, at 507,378 to 508,274 _RS06315 Position (kb) 506 507 508Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 505.656 kb on + strand, within HMPREF1058_RS06330at 505.685 kb on + strand, within HMPREF1058_RS06330at 505.779 kb on + strand, within HMPREF1058_RS06330at 505.779 kb on + strand, within HMPREF1058_RS06330at 505.780 kb on - strand, within HMPREF1058_RS06330at 505.972 kb on - strandat 506.030 kb on + strandat 506.108 kb on + strand, within HMPREF1058_RS06325at 506.191 kb on + strand, within HMPREF1058_RS06325at 506.201 kb on + strand, within HMPREF1058_RS06325at 506.231 kb on + strand, within HMPREF1058_RS06325at 506.232 kb on - strand, within HMPREF1058_RS06325at 506.295 kb on + strand, within HMPREF1058_RS06325at 506.330 kb on + strand, within HMPREF1058_RS06325at 506.470 kb on + strand, within HMPREF1058_RS06325at 506.471 kb on - strand, within HMPREF1058_RS06325at 506.598 kb on - strandat 506.641 kb on - strandat 506.641 kb on - strandat 506.643 kb on - strandat 506.644 kb on + strandat 506.644 kb on + strandat 506.651 kb on - strandat 506.655 kb on - strandat 506.744 kb on + strand, within HMPREF1058_RS06320at 506.795 kb on + strand, within HMPREF1058_RS06320at 506.799 kb on + strand, within HMPREF1058_RS06320at 506.799 kb on + strand, within HMPREF1058_RS06320at 506.799 kb on + strand, within HMPREF1058_RS06320at 506.800 kb on - strand, within HMPREF1058_RS06320at 506.805 kb on - strand, within HMPREF1058_RS06320at 506.885 kb on - strand, within HMPREF1058_RS06320at 506.914 kb on + strand, within HMPREF1058_RS06320at 506.915 kb on - strand, within HMPREF1058_RS06320at 507.036 kb on + strand, within HMPREF1058_RS06320at 507.036 kb on + strandat 507.047 kb on + strand, within HMPREF1058_RS06320at 507.103 kb on + strand, within HMPREF1058_RS06320at 507.117 kb on - strand, within HMPREF1058_RS06320at 507.118 kb on + strand, within HMPREF1058_RS06320at 507.118 kb on + strand, within HMPREF1058_RS06320at 507.119 kb on - strand, within HMPREF1058_RS06320at 507.122 kb on + strandat 507.199 kb on + strandat 507.301 kb on - strandat 507.358 kb on - strandat 507.397 kb on + strandat 507.423 kb on + strandat 507.423 kb on + strandat 507.489 kb on + strand, within HMPREF1058_RS06315at 507.489 kb on + strand, within HMPREF1058_RS06315at 507.489 kb on + strand, within HMPREF1058_RS06315at 507.489 kb on + strand, within HMPREF1058_RS06315at 507.490 kb on - strand, within HMPREF1058_RS06315at 507.490 kb on - strand, within HMPREF1058_RS06315at 507.490 kb on - strand, within HMPREF1058_RS06315at 507.490 kb on - strand, within HMPREF1058_RS06315at 507.490 kb on - strand, within HMPREF1058_RS06315at 507.490 kb on - strand, within HMPREF1058_RS06315at 507.532 kb on + strand, within HMPREF1058_RS06315at 507.579 kb on + strand, within HMPREF1058_RS06315at 507.580 kb on - strand, within HMPREF1058_RS06315at 507.603 kb on + strand, within HMPREF1058_RS06315at 507.603 kb on + strand, within HMPREF1058_RS06315at 507.769 kb on + strand, within HMPREF1058_RS06315at 507.769 kb on + strand, within HMPREF1058_RS06315at 507.769 kb on + strand, within HMPREF1058_RS06315at 507.772 kb on - strand, within HMPREF1058_RS06315at 507.773 kb on + strand, within HMPREF1058_RS06315at 507.773 kb on + strand, within HMPREF1058_RS06315at 507.774 kb on - strand, within HMPREF1058_RS06315at 507.809 kb on + strand, within HMPREF1058_RS06315at 507.810 kb on - strand, within HMPREF1058_RS06315at 507.841 kb on + strand, within HMPREF1058_RS06315at 507.872 kb on + strand, within HMPREF1058_RS06315at 507.873 kb on - strand, within HMPREF1058_RS06315at 507.928 kb on + strand, within HMPREF1058_RS06315at 507.929 kb on - strand, within HMPREF1058_RS06315at 507.937 kb on + strand, within HMPREF1058_RS06315at 507.954 kb on + strand, within HMPREF1058_RS06315at 507.972 kb on - strand, within HMPREF1058_RS06315at 508.014 kb on - strand, within HMPREF1058_RS06315at 508.014 kb on - strand, within HMPREF1058_RS06315at 508.072 kb on + strand, within HMPREF1058_RS06315at 508.072 kb on + strand, within HMPREF1058_RS06315at 508.073 kb on - strand, within HMPREF1058_RS06315at 508.104 kb on + strand, within HMPREF1058_RS06315at 508.105 kb on - strand, within HMPREF1058_RS06315at 508.121 kb on + strand, within HMPREF1058_RS06315at 508.133 kb on + strand, within HMPREF1058_RS06315at 508.211 kb on - strandat 508.236 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
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505,656 + HMPREF1058_RS06330 0.55 +0.2
505,685 + HMPREF1058_RS06330 0.58 -1.6
505,779 + HMPREF1058_RS06330 0.70 +0.7
505,779 + HMPREF1058_RS06330 0.70 +1.5
505,780 - HMPREF1058_RS06330 0.70 -1.9
505,972 - -0.5
506,030 + +1.1
506,108 + HMPREF1058_RS06325 0.13 +0.3
506,191 + HMPREF1058_RS06325 0.27 -2.0
506,201 + HMPREF1058_RS06325 0.29 -0.9
506,231 + HMPREF1058_RS06325 0.34 -1.4
506,232 - HMPREF1058_RS06325 0.34 -0.2
506,295 + HMPREF1058_RS06325 0.45 -0.2
506,330 + HMPREF1058_RS06325 0.51 -2.7
506,470 + HMPREF1058_RS06325 0.75 -1.7
506,471 - HMPREF1058_RS06325 0.75 +0.1
506,598 - -0.4
506,641 - -0.4
506,641 - +0.3
506,643 - -1.7
506,644 + -1.9
506,644 + -2.6
506,651 - -3.5
506,655 - -2.0
506,744 + HMPREF1058_RS06320 0.18 -0.4
506,795 + HMPREF1058_RS06320 0.27 -2.4
506,799 + HMPREF1058_RS06320 0.27 -0.8
506,799 + HMPREF1058_RS06320 0.27 -1.7
506,799 + HMPREF1058_RS06320 0.27 +0.1
506,800 - HMPREF1058_RS06320 0.28 -0.7
506,805 - HMPREF1058_RS06320 0.28 -1.1
506,885 - HMPREF1058_RS06320 0.42 -1.3
506,914 + HMPREF1058_RS06320 0.46 -2.3
506,915 - HMPREF1058_RS06320 0.47 -3.7
507,036 + HMPREF1058_RS06320 0.67 -0.5
507,036 + -0.4
507,047 + HMPREF1058_RS06320 0.68 -1.1
507,103 + HMPREF1058_RS06320 0.78 -3.1
507,117 - HMPREF1058_RS06320 0.80 -2.2
507,118 + HMPREF1058_RS06320 0.80 -1.4
507,118 + HMPREF1058_RS06320 0.80 -2.5
507,119 - HMPREF1058_RS06320 0.80 -3.3
507,122 + -0.8
507,199 + -1.2
507,301 - -0.3
507,358 - -0.7
507,397 + -0.1
507,423 + -0.9
507,423 + -1.4
507,489 + HMPREF1058_RS06315 0.12 +1.6
507,489 + HMPREF1058_RS06315 0.12 +0.2
507,489 + HMPREF1058_RS06315 0.12 -0.2
507,489 + HMPREF1058_RS06315 0.12 +0.2
507,490 - HMPREF1058_RS06315 0.12 -0.9
507,490 - HMPREF1058_RS06315 0.12 -0.1
507,490 - HMPREF1058_RS06315 0.12 -1.4
507,490 - HMPREF1058_RS06315 0.12 +0.6
507,490 - HMPREF1058_RS06315 0.12 +0.1
507,490 - HMPREF1058_RS06315 0.12 +0.1
507,532 + HMPREF1058_RS06315 0.17 -0.4
507,579 + HMPREF1058_RS06315 0.22 -0.6
507,580 - HMPREF1058_RS06315 0.23 -1.4
507,603 + HMPREF1058_RS06315 0.25 +0.1
507,603 + HMPREF1058_RS06315 0.25 +0.6
507,769 + HMPREF1058_RS06315 0.44 -0.1
507,769 + HMPREF1058_RS06315 0.44 -1.2
507,769 + HMPREF1058_RS06315 0.44 +0.2
507,772 - HMPREF1058_RS06315 0.44 -1.3
507,773 + HMPREF1058_RS06315 0.44 -0.3
507,773 + HMPREF1058_RS06315 0.44 +1.8
507,774 - HMPREF1058_RS06315 0.44 -2.2
507,809 + HMPREF1058_RS06315 0.48 +0.5
507,810 - HMPREF1058_RS06315 0.48 -1.3
507,841 + HMPREF1058_RS06315 0.52 +0.4
507,872 + HMPREF1058_RS06315 0.55 +1.5
507,873 - HMPREF1058_RS06315 0.55 -1.9
507,928 + HMPREF1058_RS06315 0.61 -0.3
507,929 - HMPREF1058_RS06315 0.61 -1.1
507,937 + HMPREF1058_RS06315 0.62 -0.0
507,954 + HMPREF1058_RS06315 0.64 -2.0
507,972 - HMPREF1058_RS06315 0.66 -0.5
508,014 - HMPREF1058_RS06315 0.71 -1.3
508,014 - HMPREF1058_RS06315 0.71 -0.4
508,072 + HMPREF1058_RS06315 0.77 -0.1
508,072 + HMPREF1058_RS06315 0.77 +2.8
508,073 - HMPREF1058_RS06315 0.77 +0.6
508,104 + HMPREF1058_RS06315 0.81 -1.4
508,105 - HMPREF1058_RS06315 0.81 -1.3
508,121 + HMPREF1058_RS06315 0.83 +0.1
508,133 + HMPREF1058_RS06315 0.84 +0.1
508,211 - -0.7
508,236 - -1.7

Or see this region's nucleotide sequence