Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06315 and HMPREF1058_RS06310 are separated by 32 nucleotides HMPREF1058_RS06310 and HMPREF1058_RS06305 are separated by 293 nucleotides
HMPREF1058_RS06315: HMPREF1058_RS06315 - hypothetical protein, at 507,378 to 508,274
_RS06315
HMPREF1058_RS06310: HMPREF1058_RS06310 - UDP-glucose 4-epimerase GalE, at 508,307 to 509,341
_RS06310
HMPREF1058_RS06305: HMPREF1058_RS06305 - LruC domain-containing protein, at 509,635 to 511,512
_RS06305
Position (kb) 508
509
510 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 507.358 kb on - strand at 507.397 kb on + strand at 507.423 kb on + strand at 507.423 kb on + strand at 507.489 kb on + strand, within HMPREF1058_RS06315 at 507.489 kb on + strand, within HMPREF1058_RS06315 at 507.489 kb on + strand, within HMPREF1058_RS06315 at 507.489 kb on + strand, within HMPREF1058_RS06315 at 507.490 kb on - strand, within HMPREF1058_RS06315 at 507.490 kb on - strand, within HMPREF1058_RS06315 at 507.490 kb on - strand, within HMPREF1058_RS06315 at 507.490 kb on - strand, within HMPREF1058_RS06315 at 507.490 kb on - strand, within HMPREF1058_RS06315 at 507.490 kb on - strand, within HMPREF1058_RS06315 at 507.532 kb on + strand, within HMPREF1058_RS06315 at 507.579 kb on + strand, within HMPREF1058_RS06315 at 507.580 kb on - strand, within HMPREF1058_RS06315 at 507.603 kb on + strand, within HMPREF1058_RS06315 at 507.603 kb on + strand, within HMPREF1058_RS06315 at 507.769 kb on + strand, within HMPREF1058_RS06315 at 507.769 kb on + strand, within HMPREF1058_RS06315 at 507.769 kb on + strand, within HMPREF1058_RS06315 at 507.772 kb on - strand, within HMPREF1058_RS06315 at 507.773 kb on + strand, within HMPREF1058_RS06315 at 507.773 kb on + strand, within HMPREF1058_RS06315 at 507.774 kb on - strand, within HMPREF1058_RS06315 at 507.809 kb on + strand, within HMPREF1058_RS06315 at 507.810 kb on - strand, within HMPREF1058_RS06315 at 507.841 kb on + strand, within HMPREF1058_RS06315 at 507.872 kb on + strand, within HMPREF1058_RS06315 at 507.873 kb on - strand, within HMPREF1058_RS06315 at 507.928 kb on + strand, within HMPREF1058_RS06315 at 507.929 kb on - strand, within HMPREF1058_RS06315 at 507.937 kb on + strand, within HMPREF1058_RS06315 at 507.954 kb on + strand, within HMPREF1058_RS06315 at 507.972 kb on - strand, within HMPREF1058_RS06315 at 508.014 kb on - strand, within HMPREF1058_RS06315 at 508.014 kb on - strand, within HMPREF1058_RS06315 at 508.072 kb on + strand, within HMPREF1058_RS06315 at 508.072 kb on + strand, within HMPREF1058_RS06315 at 508.073 kb on - strand, within HMPREF1058_RS06315 at 508.104 kb on + strand, within HMPREF1058_RS06315 at 508.105 kb on - strand, within HMPREF1058_RS06315 at 508.121 kb on + strand, within HMPREF1058_RS06315 at 508.133 kb on + strand, within HMPREF1058_RS06315 at 508.211 kb on - strand at 508.236 kb on - strand at 508.240 kb on + strand at 508.299 kb on + strand at 508.299 kb on + strand at 508.365 kb on + strand at 508.365 kb on + strand at 508.366 kb on - strand at 508.435 kb on - strand, within HMPREF1058_RS06310 at 508.441 kb on + strand, within HMPREF1058_RS06310 at 508.522 kb on + strand, within HMPREF1058_RS06310 at 508.601 kb on + strand, within HMPREF1058_RS06310 at 508.690 kb on + strand, within HMPREF1058_RS06310 at 508.698 kb on - strand, within HMPREF1058_RS06310 at 508.831 kb on + strand, within HMPREF1058_RS06310 at 508.834 kb on + strand, within HMPREF1058_RS06310 at 508.835 kb on - strand, within HMPREF1058_RS06310 at 508.856 kb on - strand, within HMPREF1058_RS06310 at 508.878 kb on + strand, within HMPREF1058_RS06310 at 508.922 kb on + strand, within HMPREF1058_RS06310 at 508.922 kb on + strand, within HMPREF1058_RS06310 at 508.922 kb on + strand, within HMPREF1058_RS06310 at 508.923 kb on - strand, within HMPREF1058_RS06310 at 508.946 kb on - strand, within HMPREF1058_RS06310 at 508.979 kb on + strand, within HMPREF1058_RS06310 at 508.979 kb on + strand, within HMPREF1058_RS06310 at 508.980 kb on - strand, within HMPREF1058_RS06310 at 509.014 kb on + strand, within HMPREF1058_RS06310 at 509.014 kb on + strand, within HMPREF1058_RS06310 at 509.015 kb on - strand, within HMPREF1058_RS06310 at 509.016 kb on + strand, within HMPREF1058_RS06310 at 509.016 kb on + strand, within HMPREF1058_RS06310 at 509.016 kb on + strand, within HMPREF1058_RS06310 at 509.017 kb on - strand, within HMPREF1058_RS06310 at 509.017 kb on - strand, within HMPREF1058_RS06310 at 509.018 kb on + strand, within HMPREF1058_RS06310 at 509.018 kb on + strand, within HMPREF1058_RS06310 at 509.018 kb on + strand, within HMPREF1058_RS06310 at 509.019 kb on - strand at 509.019 kb on - strand, within HMPREF1058_RS06310 at 509.023 kb on - strand, within HMPREF1058_RS06310 at 509.290 kb on - strand at 509.319 kb on + strand at 509.340 kb on - strand at 509.438 kb on - strand at 509.455 kb on + strand at 509.455 kb on + strand at 509.455 kb on + strand at 509.455 kb on + strand at 509.455 kb on + strand at 509.455 kb on + strand at 509.455 kb on + strand at 509.456 kb on - strand at 509.456 kb on - strand at 509.496 kb on + strand at 509.497 kb on - strand at 509.574 kb on + strand at 509.578 kb on + strand at 509.606 kb on - strand at 509.619 kb on - strand at 509.629 kb on + strand at 509.694 kb on + strand at 509.695 kb on - strand at 509.695 kb on - strand at 509.703 kb on + strand at 509.703 kb on + strand at 509.703 kb on + strand at 509.705 kb on + strand at 509.705 kb on + strand at 509.706 kb on - strand at 509.706 kb on - strand at 509.706 kb on - strand at 509.706 kb on - strand at 509.706 kb on - strand at 509.706 kb on - strand at 509.707 kb on + strand at 509.708 kb on - strand at 509.708 kb on - strand at 509.708 kb on - strand at 509.790 kb on + strand at 509.791 kb on - strand at 509.855 kb on + strand, within HMPREF1058_RS06305 at 509.883 kb on + strand, within HMPREF1058_RS06305 at 509.885 kb on + strand, within HMPREF1058_RS06305 at 509.885 kb on + strand, within HMPREF1058_RS06305 at 509.885 kb on + strand, within HMPREF1058_RS06305 at 509.896 kb on + strand, within HMPREF1058_RS06305 at 509.996 kb on + strand, within HMPREF1058_RS06305 at 510.043 kb on + strand, within HMPREF1058_RS06305 at 510.044 kb on - strand, within HMPREF1058_RS06305 at 510.052 kb on + strand, within HMPREF1058_RS06305 at 510.053 kb on - strand, within HMPREF1058_RS06305 at 510.054 kb on + strand, within HMPREF1058_RS06305 at 510.231 kb on + strand, within HMPREF1058_RS06305 at 510.231 kb on + strand, within HMPREF1058_RS06305 at 510.231 kb on + strand, within HMPREF1058_RS06305 at 510.233 kb on + strand, within HMPREF1058_RS06305 at 510.233 kb on + strand, within HMPREF1058_RS06305 at 510.234 kb on - strand, within HMPREF1058_RS06305 at 510.244 kb on - strand, within HMPREF1058_RS06305 at 510.244 kb on - strand, within HMPREF1058_RS06305 at 510.244 kb on - strand, within HMPREF1058_RS06305 at 510.275 kb on + strand, within HMPREF1058_RS06305 at 510.276 kb on - strand, within HMPREF1058_RS06305 at 510.302 kb on + strand, within HMPREF1058_RS06305 at 510.303 kb on - strand, within HMPREF1058_RS06305
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 507,358 - -0.7 507,397 + -0.1 507,423 + -0.9 507,423 + -1.4 507,489 + HMPREF1058_RS06315 0.12 +1.6 507,489 + HMPREF1058_RS06315 0.12 +0.2 507,489 + HMPREF1058_RS06315 0.12 -0.2 507,489 + HMPREF1058_RS06315 0.12 +0.2 507,490 - HMPREF1058_RS06315 0.12 -0.9 507,490 - HMPREF1058_RS06315 0.12 -0.1 507,490 - HMPREF1058_RS06315 0.12 -1.4 507,490 - HMPREF1058_RS06315 0.12 +0.6 507,490 - HMPREF1058_RS06315 0.12 +0.1 507,490 - HMPREF1058_RS06315 0.12 +0.1 507,532 + HMPREF1058_RS06315 0.17 -0.4 507,579 + HMPREF1058_RS06315 0.22 -0.6 507,580 - HMPREF1058_RS06315 0.23 -1.4 507,603 + HMPREF1058_RS06315 0.25 +0.1 507,603 + HMPREF1058_RS06315 0.25 +0.6 507,769 + HMPREF1058_RS06315 0.44 -0.1 507,769 + HMPREF1058_RS06315 0.44 -1.2 507,769 + HMPREF1058_RS06315 0.44 +0.2 507,772 - HMPREF1058_RS06315 0.44 -1.3 507,773 + HMPREF1058_RS06315 0.44 -0.3 507,773 + HMPREF1058_RS06315 0.44 +1.8 507,774 - HMPREF1058_RS06315 0.44 -2.2 507,809 + HMPREF1058_RS06315 0.48 +0.5 507,810 - HMPREF1058_RS06315 0.48 -1.3 507,841 + HMPREF1058_RS06315 0.52 +0.4 507,872 + HMPREF1058_RS06315 0.55 +1.5 507,873 - HMPREF1058_RS06315 0.55 -1.9 507,928 + HMPREF1058_RS06315 0.61 -0.3 507,929 - HMPREF1058_RS06315 0.61 -1.1 507,937 + HMPREF1058_RS06315 0.62 -0.0 507,954 + HMPREF1058_RS06315 0.64 -2.0 507,972 - HMPREF1058_RS06315 0.66 -0.5 508,014 - HMPREF1058_RS06315 0.71 -1.3 508,014 - HMPREF1058_RS06315 0.71 -0.4 508,072 + HMPREF1058_RS06315 0.77 -0.1 508,072 + HMPREF1058_RS06315 0.77 +2.8 508,073 - HMPREF1058_RS06315 0.77 +0.6 508,104 + HMPREF1058_RS06315 0.81 -1.4 508,105 - HMPREF1058_RS06315 0.81 -1.3 508,121 + HMPREF1058_RS06315 0.83 +0.1 508,133 + HMPREF1058_RS06315 0.84 +0.1 508,211 - -0.7 508,236 - -1.7 508,240 + +0.1 508,299 + -3.0 508,299 + -0.3 508,365 + -0.9 508,365 + -0.4 508,366 - +0.6 508,435 - HMPREF1058_RS06310 0.12 -0.2 508,441 + HMPREF1058_RS06310 0.13 -2.0 508,522 + HMPREF1058_RS06310 0.21 -0.6 508,601 + HMPREF1058_RS06310 0.28 -1.4 508,690 + HMPREF1058_RS06310 0.37 -1.1 508,698 - HMPREF1058_RS06310 0.38 -1.3 508,831 + HMPREF1058_RS06310 0.51 -2.3 508,834 + HMPREF1058_RS06310 0.51 -0.3 508,835 - HMPREF1058_RS06310 0.51 -1.1 508,856 - HMPREF1058_RS06310 0.53 -0.4 508,878 + HMPREF1058_RS06310 0.55 -1.1 508,922 + HMPREF1058_RS06310 0.59 -1.3 508,922 + HMPREF1058_RS06310 0.59 -0.7 508,922 + HMPREF1058_RS06310 0.59 +1.0 508,923 - HMPREF1058_RS06310 0.60 -1.5 508,946 - HMPREF1058_RS06310 0.62 +0.3 508,979 + HMPREF1058_RS06310 0.65 -1.5 508,979 + HMPREF1058_RS06310 0.65 -0.8 508,980 - HMPREF1058_RS06310 0.65 +0.1 509,014 + HMPREF1058_RS06310 0.68 -0.4 509,014 + HMPREF1058_RS06310 0.68 -1.8 509,015 - HMPREF1058_RS06310 0.68 +0.1 509,016 + HMPREF1058_RS06310 0.69 +0.2 509,016 + HMPREF1058_RS06310 0.69 +1.6 509,016 + HMPREF1058_RS06310 0.69 -1.7 509,017 - HMPREF1058_RS06310 0.69 -0.7 509,017 - HMPREF1058_RS06310 0.69 -1.2 509,018 + HMPREF1058_RS06310 0.69 -0.5 509,018 + HMPREF1058_RS06310 0.69 -1.1 509,018 + HMPREF1058_RS06310 0.69 -2.2 509,019 - +0.8 509,019 - HMPREF1058_RS06310 0.69 -0.9 509,023 - HMPREF1058_RS06310 0.69 -0.5 509,290 - -0.2 509,319 + +1.4 509,340 - -0.3 509,438 - -0.0 509,455 + +0.4 509,455 + -0.1 509,455 + -0.2 509,455 + +0.6 509,455 + -0.2 509,455 + +2.6 509,455 + +0.0 509,456 - -1.3 509,456 - -1.1 509,496 + -0.5 509,497 - -0.7 509,574 + -1.8 509,578 + -0.2 509,606 - -0.5 509,619 - -1.2 509,629 + +0.2 509,694 + +0.5 509,695 - -0.4 509,695 - +0.3 509,703 + +0.3 509,703 + -3.1 509,703 + +0.1 509,705 + -1.9 509,705 + -0.8 509,706 - -1.1 509,706 - +0.1 509,706 - +0.4 509,706 - -0.8 509,706 - +0.5 509,706 - +0.3 509,707 + +0.5 509,708 - -1.3 509,708 - -1.1 509,708 - +0.2 509,790 + -0.5 509,791 - -0.8 509,855 + HMPREF1058_RS06305 0.12 -0.4 509,883 + HMPREF1058_RS06305 0.13 +0.8 509,885 + HMPREF1058_RS06305 0.13 +0.9 509,885 + HMPREF1058_RS06305 0.13 -0.5 509,885 + HMPREF1058_RS06305 0.13 +0.3 509,896 + HMPREF1058_RS06305 0.14 +0.4 509,996 + HMPREF1058_RS06305 0.19 -1.3 510,043 + HMPREF1058_RS06305 0.22 -0.5 510,044 - HMPREF1058_RS06305 0.22 +1.5 510,052 + HMPREF1058_RS06305 0.22 +0.8 510,053 - HMPREF1058_RS06305 0.22 -1.0 510,054 + HMPREF1058_RS06305 0.22 +0.4 510,231 + HMPREF1058_RS06305 0.32 +1.4 510,231 + HMPREF1058_RS06305 0.32 -0.5 510,231 + HMPREF1058_RS06305 0.32 +0.9 510,233 + HMPREF1058_RS06305 0.32 -1.6 510,233 + HMPREF1058_RS06305 0.32 -0.6 510,234 - HMPREF1058_RS06305 0.32 -1.2 510,244 - HMPREF1058_RS06305 0.32 -0.3 510,244 - HMPREF1058_RS06305 0.32 -1.4 510,244 - HMPREF1058_RS06305 0.32 -0.8 510,275 + HMPREF1058_RS06305 0.34 +0.2 510,276 - HMPREF1058_RS06305 0.34 -2.8 510,302 + HMPREF1058_RS06305 0.36 -1.0 510,303 - HMPREF1058_RS06305 0.36 -0.5
Or see this region's nucleotide sequence