Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS06195

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS06205 and HMPREF1058_RS06200 are separated by 204 nucleotidesHMPREF1058_RS06200 and HMPREF1058_RS06195 are separated by 64 nucleotidesHMPREF1058_RS06195 and HMPREF1058_RS06190 are separated by 107 nucleotides HMPREF1058_RS06205: HMPREF1058_RS06205 - glycosyltransferase, at 535,663 to 536,820 _RS06205 HMPREF1058_RS06200: HMPREF1058_RS06200 - hypothetical protein, at 537,025 to 537,531 _RS06200 HMPREF1058_RS06195: HMPREF1058_RS06195 - diaminopimelate decarboxylase, at 537,596 to 538,756 _RS06195 HMPREF1058_RS06190: HMPREF1058_RS06190 - aspartate kinase, at 538,864 to 540,183 _RS06190 Position (kb) 537 538 539Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 536.687 kb on - strand, within HMPREF1058_RS06205at 536.687 kb on - strand, within HMPREF1058_RS06205at 536.687 kb on - strand, within HMPREF1058_RS06205at 536.687 kb on - strand, within HMPREF1058_RS06205at 536.699 kb on + strand, within HMPREF1058_RS06205at 536.700 kb on - strand, within HMPREF1058_RS06205at 536.724 kb on - strandat 536.726 kb on - strandat 536.733 kb on + strandat 536.734 kb on - strandat 536.735 kb on + strandat 536.737 kb on + strandat 536.737 kb on + strandat 536.800 kb on - strandat 536.850 kb on + strandat 536.960 kb on - strandat 536.961 kb on + strandat 537.022 kb on - strandat 537.065 kb on + strandat 537.079 kb on - strand, within HMPREF1058_RS06200at 537.159 kb on + strand, within HMPREF1058_RS06200at 537.219 kb on + strand, within HMPREF1058_RS06200at 537.235 kb on - strand, within HMPREF1058_RS06200at 537.235 kb on - strand, within HMPREF1058_RS06200at 537.239 kb on - strand, within HMPREF1058_RS06200at 537.239 kb on - strand, within HMPREF1058_RS06200at 537.269 kb on - strand, within HMPREF1058_RS06200at 537.358 kb on - strand, within HMPREF1058_RS06200at 537.366 kb on - strand, within HMPREF1058_RS06200at 537.366 kb on - strand, within HMPREF1058_RS06200at 537.368 kb on + strand, within HMPREF1058_RS06200at 537.398 kb on - strand, within HMPREF1058_RS06200at 537.414 kb on - strand, within HMPREF1058_RS06200at 537.419 kb on + strand, within HMPREF1058_RS06200at 537.451 kb on - strand, within HMPREF1058_RS06200at 537.525 kb on + strandat 537.550 kb on - strandat 537.550 kb on - strandat 537.574 kb on + strandat 537.598 kb on - strandat 537.670 kb on - strandat 537.670 kb on - strandat 537.670 kb on - strandat 537.741 kb on - strand, within HMPREF1058_RS06195at 537.805 kb on + strand, within HMPREF1058_RS06195at 537.870 kb on - strand, within HMPREF1058_RS06195at 537.873 kb on - strand, within HMPREF1058_RS06195at 537.907 kb on - strand, within HMPREF1058_RS06195at 537.945 kb on - strand, within HMPREF1058_RS06195at 537.968 kb on + strand, within HMPREF1058_RS06195at 538.006 kb on - strand, within HMPREF1058_RS06195at 538.083 kb on - strand, within HMPREF1058_RS06195at 538.090 kb on + strand, within HMPREF1058_RS06195at 538.091 kb on - strand, within HMPREF1058_RS06195at 538.091 kb on - strand, within HMPREF1058_RS06195at 538.091 kb on - strand, within HMPREF1058_RS06195at 538.116 kb on + strand, within HMPREF1058_RS06195at 538.117 kb on - strand, within HMPREF1058_RS06195at 538.157 kb on + strand, within HMPREF1058_RS06195at 538.171 kb on + strand, within HMPREF1058_RS06195at 538.203 kb on - strand, within HMPREF1058_RS06195at 538.203 kb on - strand, within HMPREF1058_RS06195at 538.306 kb on + strand, within HMPREF1058_RS06195at 538.383 kb on - strand, within HMPREF1058_RS06195at 538.383 kb on - strand, within HMPREF1058_RS06195at 538.419 kb on - strand, within HMPREF1058_RS06195at 538.475 kb on - strand, within HMPREF1058_RS06195at 538.478 kb on + strand, within HMPREF1058_RS06195at 538.479 kb on - strandat 538.489 kb on - strand, within HMPREF1058_RS06195at 538.489 kb on - strand, within HMPREF1058_RS06195at 538.489 kb on - strand, within HMPREF1058_RS06195at 538.548 kb on - strand, within HMPREF1058_RS06195at 538.548 kb on - strand, within HMPREF1058_RS06195at 538.699 kb on - strandat 538.702 kb on - strandat 538.761 kb on + strandat 538.879 kb on + strandat 538.941 kb on + strandat 538.946 kb on + strandat 538.971 kb on + strandat 539.058 kb on + strand, within HMPREF1058_RS06190at 539.058 kb on + strand, within HMPREF1058_RS06190at 539.090 kb on + strand, within HMPREF1058_RS06190at 539.090 kb on + strand, within HMPREF1058_RS06190at 539.212 kb on + strand, within HMPREF1058_RS06190at 539.358 kb on + strand, within HMPREF1058_RS06190at 539.387 kb on + strand, within HMPREF1058_RS06190at 539.387 kb on + strand, within HMPREF1058_RS06190at 539.409 kb on + strand, within HMPREF1058_RS06190at 539.410 kb on - strand, within HMPREF1058_RS06190at 539.526 kb on + strand, within HMPREF1058_RS06190at 539.527 kb on - strand, within HMPREF1058_RS06190at 539.615 kb on - strand, within HMPREF1058_RS06190at 539.710 kb on - strand, within HMPREF1058_RS06190at 539.711 kb on + strand, within HMPREF1058_RS06190at 539.711 kb on + strand, within HMPREF1058_RS06190at 539.712 kb on - strand, within HMPREF1058_RS06190

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
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536,687 - HMPREF1058_RS06205 0.88 +0.1
536,687 - HMPREF1058_RS06205 0.88 +0.4
536,687 - HMPREF1058_RS06205 0.88 -0.2
536,687 - HMPREF1058_RS06205 0.88 -1.3
536,699 + HMPREF1058_RS06205 0.89 -0.4
536,700 - HMPREF1058_RS06205 0.90 +0.1
536,724 - -1.4
536,726 - -1.1
536,733 + +0.4
536,734 - -0.2
536,735 + -1.7
536,737 + -1.5
536,737 + -0.2
536,800 - +1.4
536,850 + -2.6
536,960 - -0.5
536,961 + +0.9
537,022 - +0.5
537,065 + -0.4
537,079 - HMPREF1058_RS06200 0.11 -1.7
537,159 + HMPREF1058_RS06200 0.26 +0.7
537,219 + HMPREF1058_RS06200 0.38 -0.1
537,235 - HMPREF1058_RS06200 0.41 -0.8
537,235 - HMPREF1058_RS06200 0.41 +1.9
537,239 - HMPREF1058_RS06200 0.42 +1.1
537,239 - HMPREF1058_RS06200 0.42 +0.6
537,269 - HMPREF1058_RS06200 0.48 +0.2
537,358 - HMPREF1058_RS06200 0.66 +0.3
537,366 - HMPREF1058_RS06200 0.67 +0.8
537,366 - HMPREF1058_RS06200 0.67 -1.0
537,368 + HMPREF1058_RS06200 0.68 -0.6
537,398 - HMPREF1058_RS06200 0.74 -0.0
537,414 - HMPREF1058_RS06200 0.77 -0.9
537,419 + HMPREF1058_RS06200 0.78 +0.8
537,451 - HMPREF1058_RS06200 0.84 -1.1
537,525 + +1.5
537,550 - -0.7
537,550 - +4.6
537,574 + -1.4
537,598 - +0.6
537,670 - -1.4
537,670 - -1.7
537,670 - -0.2
537,741 - HMPREF1058_RS06195 0.12 -2.1
537,805 + HMPREF1058_RS06195 0.18 -1.8
537,870 - HMPREF1058_RS06195 0.24 -5.5
537,873 - HMPREF1058_RS06195 0.24 -2.9
537,907 - HMPREF1058_RS06195 0.27 -0.9
537,945 - HMPREF1058_RS06195 0.30 -1.4
537,968 + HMPREF1058_RS06195 0.32 -2.1
538,006 - HMPREF1058_RS06195 0.35 -2.4
538,083 - HMPREF1058_RS06195 0.42 -2.6
538,090 + HMPREF1058_RS06195 0.43 -1.6
538,091 - HMPREF1058_RS06195 0.43 -2.8
538,091 - HMPREF1058_RS06195 0.43 -1.3
538,091 - HMPREF1058_RS06195 0.43 -3.3
538,116 + HMPREF1058_RS06195 0.45 +0.6
538,117 - HMPREF1058_RS06195 0.45 -1.3
538,157 + HMPREF1058_RS06195 0.48 -1.8
538,171 + HMPREF1058_RS06195 0.50 -0.6
538,203 - HMPREF1058_RS06195 0.52 -4.2
538,203 - HMPREF1058_RS06195 0.52 -1.3
538,306 + HMPREF1058_RS06195 0.61 -1.8
538,383 - HMPREF1058_RS06195 0.68 -2.5
538,383 - HMPREF1058_RS06195 0.68 -4.3
538,419 - HMPREF1058_RS06195 0.71 -0.9
538,475 - HMPREF1058_RS06195 0.76 -1.9
538,478 + HMPREF1058_RS06195 0.76 -1.7
538,479 - -0.7
538,489 - HMPREF1058_RS06195 0.77 -1.1
538,489 - HMPREF1058_RS06195 0.77 -2.2
538,489 - HMPREF1058_RS06195 0.77 -0.4
538,548 - HMPREF1058_RS06195 0.82 -2.0
538,548 - HMPREF1058_RS06195 0.82 +0.3
538,699 - -2.6
538,702 - -1.7
538,761 + -1.4
538,879 + -2.5
538,941 + -1.1
538,946 + -2.7
538,971 + -3.8
539,058 + HMPREF1058_RS06190 0.15 -0.7
539,058 + HMPREF1058_RS06190 0.15 +0.1
539,090 + HMPREF1058_RS06190 0.17 -3.0
539,090 + HMPREF1058_RS06190 0.17 +1.6
539,212 + HMPREF1058_RS06190 0.26 -0.2
539,358 + HMPREF1058_RS06190 0.37 -2.1
539,387 + HMPREF1058_RS06190 0.40 -0.8
539,387 + HMPREF1058_RS06190 0.40 +1.9
539,409 + HMPREF1058_RS06190 0.41 -1.2
539,410 - HMPREF1058_RS06190 0.41 +1.6
539,526 + HMPREF1058_RS06190 0.50 -1.3
539,527 - HMPREF1058_RS06190 0.50 +1.6
539,615 - HMPREF1058_RS06190 0.57 +0.1
539,710 - HMPREF1058_RS06190 0.64 -1.4
539,711 + HMPREF1058_RS06190 0.64 +1.6
539,711 + HMPREF1058_RS06190 0.64 +1.8
539,712 - HMPREF1058_RS06190 0.64 +0.6

Or see this region's nucleotide sequence