Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06180 and HMPREF1058_RS06175 are separated by 164 nucleotides HMPREF1058_RS06175 and HMPREF1058_RS06170 are separated by 9 nucleotides HMPREF1058_RS06170 and HMPREF1058_RS06165 are separated by 41 nucleotides HMPREF1058_RS06165 and HMPREF1058_RS06160 overlap by 1 nucleotides
HMPREF1058_RS06180: HMPREF1058_RS06180 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE, at 541,051 to 541,662
_RS06180
HMPREF1058_RS06175: HMPREF1058_RS06175 - imidazole glycerol phosphate synthase subunit HisF, at 541,827 to 542,582
_RS06175
HMPREF1058_RS06170: HMPREF1058_RS06170 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 542,592 to 543,311
_RS06170
HMPREF1058_RS06165: HMPREF1058_RS06165 - imidazole glycerol phosphate synthase subunit HisH, at 543,353 to 543,943
_RS06165
HMPREF1058_RS06160: HMPREF1058_RS06160 - formyltetrahydrofolate deformylase, at 543,943 to 544,800
_RS06160
Position (kb) 542
543
544 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 541.615 kb on + strand at 541.616 kb on - strand at 541.683 kb on + strand at 541.684 kb on - strand at 541.697 kb on + strand at 541.697 kb on + strand at 541.698 kb on - strand at 541.828 kb on + strand at 541.831 kb on - strand at 541.842 kb on - strand at 542.129 kb on - strand, within HMPREF1058_RS06175 at 542.335 kb on - strand, within HMPREF1058_RS06175 at 542.336 kb on + strand, within HMPREF1058_RS06175 at 542.336 kb on + strand, within HMPREF1058_RS06175 at 542.337 kb on - strand, within HMPREF1058_RS06175 at 542.337 kb on - strand, within HMPREF1058_RS06175 at 542.467 kb on + strand, within HMPREF1058_RS06175 at 542.471 kb on + strand, within HMPREF1058_RS06175 at 542.471 kb on + strand, within HMPREF1058_RS06175 at 542.529 kb on + strand at 542.594 kb on - strand at 542.594 kb on - strand at 542.635 kb on + strand at 542.697 kb on + strand, within HMPREF1058_RS06170 at 542.815 kb on - strand, within HMPREF1058_RS06170 at 542.815 kb on - strand, within HMPREF1058_RS06170 at 542.838 kb on - strand, within HMPREF1058_RS06170 at 542.841 kb on - strand, within HMPREF1058_RS06170 at 542.842 kb on + strand, within HMPREF1058_RS06170 at 542.843 kb on - strand, within HMPREF1058_RS06170 at 543.010 kb on - strand, within HMPREF1058_RS06170 at 543.228 kb on + strand, within HMPREF1058_RS06170 at 543.229 kb on - strand, within HMPREF1058_RS06170 at 543.244 kb on + strand at 543.300 kb on + strand at 543.301 kb on - strand at 543.301 kb on - strand at 543.315 kb on + strand at 543.316 kb on - strand at 543.328 kb on - strand at 543.328 kb on - strand at 543.335 kb on + strand at 543.340 kb on - strand at 543.340 kb on - strand at 543.342 kb on - strand at 543.467 kb on - strand, within HMPREF1058_RS06165 at 543.467 kb on - strand, within HMPREF1058_RS06165 at 543.507 kb on + strand, within HMPREF1058_RS06165 at 543.508 kb on - strand, within HMPREF1058_RS06165 at 543.519 kb on - strand, within HMPREF1058_RS06165 at 543.519 kb on - strand, within HMPREF1058_RS06165 at 543.638 kb on + strand, within HMPREF1058_RS06165 at 543.638 kb on + strand, within HMPREF1058_RS06165 at 543.722 kb on + strand, within HMPREF1058_RS06165 at 543.726 kb on - strand, within HMPREF1058_RS06165 at 543.737 kb on + strand, within HMPREF1058_RS06165 at 543.737 kb on + strand, within HMPREF1058_RS06165 at 543.746 kb on - strand, within HMPREF1058_RS06165 at 543.839 kb on + strand, within HMPREF1058_RS06165 at 543.840 kb on - strand, within HMPREF1058_RS06165 at 543.903 kb on + strand at 543.954 kb on + strand at 543.955 kb on - strand at 543.972 kb on - strand at 543.993 kb on + strand at 543.993 kb on + strand at 544.048 kb on + strand, within HMPREF1058_RS06160 at 544.087 kb on + strand, within HMPREF1058_RS06160 at 544.088 kb on - strand, within HMPREF1058_RS06160 at 544.225 kb on + strand, within HMPREF1058_RS06160 at 544.282 kb on - strand, within HMPREF1058_RS06160
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 541,615 + -1.9 541,616 - -1.3 541,683 + -2.4 541,684 - +2.2 541,697 + -2.7 541,697 + -2.4 541,698 - -0.7 541,828 + -3.5 541,831 - +1.1 541,842 - -2.0 542,129 - HMPREF1058_RS06175 0.40 -2.9 542,335 - HMPREF1058_RS06175 0.67 -1.7 542,336 + HMPREF1058_RS06175 0.67 -0.2 542,336 + HMPREF1058_RS06175 0.67 +0.8 542,337 - HMPREF1058_RS06175 0.67 -1.1 542,337 - HMPREF1058_RS06175 0.67 -1.3 542,467 + HMPREF1058_RS06175 0.85 -2.0 542,471 + HMPREF1058_RS06175 0.85 -3.4 542,471 + HMPREF1058_RS06175 0.85 -1.4 542,529 + -2.5 542,594 - -1.1 542,594 - -0.5 542,635 + -3.5 542,697 + HMPREF1058_RS06170 0.15 -3.7 542,815 - HMPREF1058_RS06170 0.31 -0.3 542,815 - HMPREF1058_RS06170 0.31 -2.5 542,838 - HMPREF1058_RS06170 0.34 -2.0 542,841 - HMPREF1058_RS06170 0.35 -2.4 542,842 + HMPREF1058_RS06170 0.35 -0.8 542,843 - HMPREF1058_RS06170 0.35 -1.7 543,010 - HMPREF1058_RS06170 0.58 -2.4 543,228 + HMPREF1058_RS06170 0.88 -1.1 543,229 - HMPREF1058_RS06170 0.88 -2.8 543,244 + -1.9 543,300 + +0.6 543,301 - +0.1 543,301 - -1.3 543,315 + -1.5 543,316 - -0.7 543,328 - -0.8 543,328 - +1.0 543,335 + -1.7 543,340 - -0.4 543,340 - +0.9 543,342 - -0.5 543,467 - HMPREF1058_RS06165 0.19 +1.0 543,467 - HMPREF1058_RS06165 0.19 +0.6 543,507 + HMPREF1058_RS06165 0.26 -0.2 543,508 - HMPREF1058_RS06165 0.26 -1.7 543,519 - HMPREF1058_RS06165 0.28 -2.4 543,519 - HMPREF1058_RS06165 0.28 -1.4 543,638 + HMPREF1058_RS06165 0.48 -3.8 543,638 + HMPREF1058_RS06165 0.48 -2.1 543,722 + HMPREF1058_RS06165 0.62 -0.9 543,726 - HMPREF1058_RS06165 0.63 -1.0 543,737 + HMPREF1058_RS06165 0.65 -2.9 543,737 + HMPREF1058_RS06165 0.65 -2.3 543,746 - HMPREF1058_RS06165 0.66 +1.2 543,839 + HMPREF1058_RS06165 0.82 -0.2 543,840 - HMPREF1058_RS06165 0.82 -0.7 543,903 + -2.3 543,954 + -2.4 543,955 - +2.1 543,972 - +0.3 543,993 + -1.4 543,993 + -1.9 544,048 + HMPREF1058_RS06160 0.12 -0.1 544,087 + HMPREF1058_RS06160 0.17 -2.1 544,088 - HMPREF1058_RS06160 0.17 -0.2 544,225 + HMPREF1058_RS06160 0.33 +1.7 544,282 - HMPREF1058_RS06160 0.40 -0.2
Or see this region's nucleotide sequence