Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05365 and HMPREF1058_RS21500 are separated by 212 nucleotides HMPREF1058_RS21500 and HMPREF1058_RS05360 are separated by 32 nucleotides HMPREF1058_RS05360 and HMPREF1058_RS05355 are separated by 11 nucleotides HMPREF1058_RS05355 and HMPREF1058_RS05350 are separated by 188 nucleotides
HMPREF1058_RS05365: HMPREF1058_RS05365 - hypothetical protein, at 181,794 to 182,354
_RS05365
HMPREF1058_RS21500: HMPREF1058_RS21500 - hypothetical protein, at 182,567 to 182,740
_RS21500
HMPREF1058_RS05360: HMPREF1058_RS05360 - helix-turn-helix domain-containing protein, at 182,773 to 183,099
_RS05360
HMPREF1058_RS05355: HMPREF1058_RS05355 - helix-turn-helix domain-containing protein, at 183,111 to 183,431
_RS05355
HMPREF1058_RS05350: HMPREF1058_RS05350 - Fic family protein, at 183,620 to 184,642
_RS05350
Position (kb) 182
183
184 Strain fitness (log2 ratio) -1
0
1
2
3 at 181.921 kb on - strand, within HMPREF1058_RS05365 at 182.011 kb on - strand, within HMPREF1058_RS05365 at 182.011 kb on - strand, within HMPREF1058_RS05365 at 182.179 kb on + strand, within HMPREF1058_RS05365 at 182.305 kb on + strand at 182.306 kb on - strand at 182.368 kb on + strand at 182.368 kb on + strand at 182.549 kb on + strand at 182.550 kb on - strand at 182.780 kb on + strand at 182.781 kb on - strand at 182.997 kb on - strand, within HMPREF1058_RS05360 at 183.054 kb on + strand, within HMPREF1058_RS05360 at 183.086 kb on + strand at 183.087 kb on - strand at 183.098 kb on - strand at 183.111 kb on - strand at 183.215 kb on - strand, within HMPREF1058_RS05355 at 183.252 kb on + strand, within HMPREF1058_RS05355 at 183.255 kb on + strand, within HMPREF1058_RS05355 at 183.255 kb on + strand, within HMPREF1058_RS05355 at 183.256 kb on - strand, within HMPREF1058_RS05355 at 183.347 kb on - strand, within HMPREF1058_RS05355 at 183.387 kb on - strand, within HMPREF1058_RS05355 at 183.387 kb on - strand, within HMPREF1058_RS05355 at 183.402 kb on + strand at 183.403 kb on - strand at 183.441 kb on + strand at 183.477 kb on - strand at 183.577 kb on - strand at 183.646 kb on - strand at 183.699 kb on - strand at 183.724 kb on + strand, within HMPREF1058_RS05350 at 183.945 kb on - strand, within HMPREF1058_RS05350 at 184.028 kb on + strand, within HMPREF1058_RS05350 at 184.028 kb on + strand, within HMPREF1058_RS05350
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 181,921 - HMPREF1058_RS05365 0.23 +0.6 182,011 - HMPREF1058_RS05365 0.39 -0.2 182,011 - HMPREF1058_RS05365 0.39 -1.5 182,179 + HMPREF1058_RS05365 0.69 +0.5 182,305 + -0.7 182,306 - +1.2 182,368 + +1.2 182,368 + -1.1 182,549 + +0.4 182,550 - -0.5 182,780 + -1.0 182,781 - +0.7 182,997 - HMPREF1058_RS05360 0.69 -1.3 183,054 + HMPREF1058_RS05360 0.86 -1.1 183,086 + +0.2 183,087 - +1.2 183,098 - +0.6 183,111 - -0.7 183,215 - HMPREF1058_RS05355 0.32 +0.4 183,252 + HMPREF1058_RS05355 0.44 -0.0 183,255 + HMPREF1058_RS05355 0.45 +1.5 183,255 + HMPREF1058_RS05355 0.45 +1.8 183,256 - HMPREF1058_RS05355 0.45 +0.4 183,347 - HMPREF1058_RS05355 0.74 +0.1 183,387 - HMPREF1058_RS05355 0.86 -0.6 183,387 - HMPREF1058_RS05355 0.86 +2.8 183,402 + -0.4 183,403 - -0.9 183,441 + +0.6 183,477 - +0.4 183,577 - -0.2 183,646 - +0.9 183,699 - +0.0 183,724 + HMPREF1058_RS05350 0.10 +0.7 183,945 - HMPREF1058_RS05350 0.32 -0.7 184,028 + HMPREF1058_RS05350 0.40 +0.7 184,028 + HMPREF1058_RS05350 0.40 +0.2
Or see this region's nucleotide sequence