Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05150 and HMPREF1058_RS05145 are separated by 102 nucleotides HMPREF1058_RS05145 and HMPREF1058_RS05140 are separated by 42 nucleotides
HMPREF1058_RS05150: HMPREF1058_RS05150 - hypothetical protein, at 230,967 to 232,178
_RS05150
HMPREF1058_RS05145: HMPREF1058_RS05145 - ATP-binding protein, at 232,281 to 233,459
_RS05145
HMPREF1058_RS05140: HMPREF1058_RS05140 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 233,502 to 237,047
_RS05140
Position (kb) 232
233
234 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 231.297 kb on + strand, within HMPREF1058_RS05150 at 231.342 kb on + strand, within HMPREF1058_RS05150 at 231.343 kb on - strand, within HMPREF1058_RS05150 at 231.343 kb on - strand, within HMPREF1058_RS05150 at 231.361 kb on + strand, within HMPREF1058_RS05150 at 231.453 kb on + strand, within HMPREF1058_RS05150 at 231.455 kb on + strand, within HMPREF1058_RS05150 at 231.463 kb on - strand, within HMPREF1058_RS05150 at 231.555 kb on + strand, within HMPREF1058_RS05150 at 231.587 kb on + strand, within HMPREF1058_RS05150 at 231.610 kb on - strand, within HMPREF1058_RS05150 at 231.735 kb on + strand, within HMPREF1058_RS05150 at 231.735 kb on + strand, within HMPREF1058_RS05150 at 231.736 kb on - strand, within HMPREF1058_RS05150 at 231.743 kb on + strand, within HMPREF1058_RS05150 at 231.786 kb on + strand, within HMPREF1058_RS05150 at 232.016 kb on - strand, within HMPREF1058_RS05150 at 232.073 kb on + strand at 232.075 kb on + strand at 232.075 kb on + strand at 232.075 kb on + strand at 232.075 kb on + strand at 232.075 kb on + strand at 232.076 kb on - strand at 232.076 kb on - strand at 232.164 kb on + strand at 232.247 kb on + strand at 232.248 kb on - strand at 232.360 kb on + strand at 232.504 kb on - strand, within HMPREF1058_RS05145 at 232.505 kb on + strand, within HMPREF1058_RS05145 at 232.505 kb on + strand, within HMPREF1058_RS05145 at 232.638 kb on - strand, within HMPREF1058_RS05145 at 232.707 kb on - strand, within HMPREF1058_RS05145 at 232.773 kb on + strand, within HMPREF1058_RS05145 at 232.773 kb on + strand, within HMPREF1058_RS05145 at 232.848 kb on + strand, within HMPREF1058_RS05145 at 232.879 kb on - strand, within HMPREF1058_RS05145 at 232.948 kb on + strand, within HMPREF1058_RS05145 at 232.952 kb on + strand, within HMPREF1058_RS05145 at 232.954 kb on + strand, within HMPREF1058_RS05145 at 232.954 kb on + strand, within HMPREF1058_RS05145 at 232.954 kb on + strand, within HMPREF1058_RS05145 at 232.954 kb on + strand, within HMPREF1058_RS05145 at 232.955 kb on - strand, within HMPREF1058_RS05145 at 232.996 kb on + strand, within HMPREF1058_RS05145 at 233.010 kb on + strand, within HMPREF1058_RS05145 at 233.291 kb on + strand, within HMPREF1058_RS05145 at 233.291 kb on + strand, within HMPREF1058_RS05145 at 233.372 kb on + strand at 233.388 kb on + strand at 233.452 kb on + strand at 233.556 kb on - strand at 233.556 kb on - strand at 233.562 kb on + strand at 233.585 kb on + strand at 233.792 kb on + strand at 233.830 kb on + strand at 233.840 kb on - strand at 233.849 kb on + strand at 233.944 kb on + strand, within HMPREF1058_RS05140 at 233.985 kb on - strand, within HMPREF1058_RS05140 at 234.235 kb on + strand, within HMPREF1058_RS05140 at 234.412 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 231,297 + HMPREF1058_RS05150 0.27 +0.2 231,342 + HMPREF1058_RS05150 0.31 -0.4 231,343 - HMPREF1058_RS05150 0.31 -0.6 231,343 - HMPREF1058_RS05150 0.31 -1.0 231,361 + HMPREF1058_RS05150 0.33 -0.8 231,453 + HMPREF1058_RS05150 0.40 +1.6 231,455 + HMPREF1058_RS05150 0.40 +0.1 231,463 - HMPREF1058_RS05150 0.41 +0.2 231,555 + HMPREF1058_RS05150 0.49 +0.3 231,587 + HMPREF1058_RS05150 0.51 -1.0 231,610 - HMPREF1058_RS05150 0.53 -1.1 231,735 + HMPREF1058_RS05150 0.63 +1.2 231,735 + HMPREF1058_RS05150 0.63 -0.1 231,736 - HMPREF1058_RS05150 0.63 +0.6 231,743 + HMPREF1058_RS05150 0.64 +0.4 231,786 + HMPREF1058_RS05150 0.68 +0.3 232,016 - HMPREF1058_RS05150 0.87 +0.7 232,073 + -0.3 232,075 + +0.7 232,075 + +1.4 232,075 + +0.6 232,075 + +1.8 232,075 + -0.3 232,076 - -0.8 232,076 - +1.3 232,164 + +1.9 232,247 + +1.3 232,248 - -0.7 232,360 + -3.1 232,504 - HMPREF1058_RS05145 0.19 -2.5 232,505 + HMPREF1058_RS05145 0.19 -4.0 232,505 + HMPREF1058_RS05145 0.19 -1.7 232,638 - HMPREF1058_RS05145 0.30 +1.8 232,707 - HMPREF1058_RS05145 0.36 -0.7 232,773 + HMPREF1058_RS05145 0.42 -0.9 232,773 + HMPREF1058_RS05145 0.42 -1.5 232,848 + HMPREF1058_RS05145 0.48 -1.6 232,879 - HMPREF1058_RS05145 0.51 -0.7 232,948 + HMPREF1058_RS05145 0.57 +0.8 232,952 + HMPREF1058_RS05145 0.57 -0.8 232,954 + HMPREF1058_RS05145 0.57 -1.7 232,954 + HMPREF1058_RS05145 0.57 -2.0 232,954 + HMPREF1058_RS05145 0.57 -2.0 232,954 + HMPREF1058_RS05145 0.57 -1.5 232,955 - HMPREF1058_RS05145 0.57 +1.1 232,996 + HMPREF1058_RS05145 0.61 -1.7 233,010 + HMPREF1058_RS05145 0.62 -1.7 233,291 + HMPREF1058_RS05145 0.86 -2.5 233,291 + HMPREF1058_RS05145 0.86 +0.3 233,372 + +1.8 233,388 + -1.6 233,452 + -0.2 233,556 - +0.8 233,556 - -0.8 233,562 + -0.6 233,585 + +0.8 233,792 + -0.2 233,830 + -0.0 233,840 - -0.7 233,849 + -0.8 233,944 + HMPREF1058_RS05140 0.12 -0.8 233,985 - HMPREF1058_RS05140 0.14 +0.4 234,235 + HMPREF1058_RS05140 0.21 -0.0 234,412 + -0.6
Or see this region's nucleotide sequence