Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05070

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS05080 and HMPREF1058_RS05075 are separated by 12 nucleotidesHMPREF1058_RS05075 and HMPREF1058_RS05070 are separated by 150 nucleotidesHMPREF1058_RS05070 and HMPREF1058_RS05065 are separated by 22 nucleotides HMPREF1058_RS05080: HMPREF1058_RS05080 - hypothetical protein, at 251,373 to 252,323 _RS05080 HMPREF1058_RS05075: HMPREF1058_RS05075 - hypothetical protein, at 252,336 to 252,821 _RS05075 HMPREF1058_RS05070: HMPREF1058_RS05070 - hypothetical protein, at 252,972 to 253,466 _RS05070 HMPREF1058_RS05065: HMPREF1058_RS05065 - WG repeat-containing protein, at 253,489 to 255,183 _RS05065 Position (kb) 252 253 254Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 252.174 kb on - strand, within HMPREF1058_RS05080at 252.283 kb on - strandat 252.300 kb on + strandat 252.305 kb on + strandat 252.306 kb on - strandat 252.310 kb on + strandat 252.471 kb on + strand, within HMPREF1058_RS05075at 252.471 kb on + strand, within HMPREF1058_RS05075at 252.472 kb on - strand, within HMPREF1058_RS05075at 252.472 kb on - strand, within HMPREF1058_RS05075at 252.476 kb on - strand, within HMPREF1058_RS05075at 252.517 kb on + strand, within HMPREF1058_RS05075at 252.642 kb on - strand, within HMPREF1058_RS05075at 252.921 kb on + strandat 252.964 kb on + strandat 252.964 kb on + strandat 252.964 kb on + strandat 252.964 kb on + strandat 252.964 kb on + strandat 252.964 kb on + strandat 252.965 kb on - strandat 252.965 kb on - strandat 252.965 kb on - strandat 252.968 kb on + strandat 252.968 kb on + strandat 252.987 kb on + strandat 252.996 kb on - strandat 252.996 kb on - strandat 253.127 kb on - strand, within HMPREF1058_RS05070at 253.127 kb on - strand, within HMPREF1058_RS05070at 253.187 kb on + strand, within HMPREF1058_RS05070at 253.248 kb on + strand, within HMPREF1058_RS05070at 253.332 kb on - strand, within HMPREF1058_RS05070at 253.345 kb on - strand, within HMPREF1058_RS05070at 253.345 kb on - strand, within HMPREF1058_RS05070at 253.427 kb on + strandat 253.427 kb on + strandat 253.436 kb on + strandat 253.483 kb on + strandat 253.484 kb on - strandat 253.485 kb on + strandat 253.486 kb on - strandat 253.488 kb on - strandat 253.551 kb on - strandat 253.603 kb on + strandat 253.604 kb on - strandat 253.604 kb on - strandat 253.610 kb on + strandat 253.632 kb on + strandat 253.647 kb on + strandat 253.648 kb on - strandat 253.654 kb on - strandat 253.654 kb on - strandat 253.678 kb on + strand, within HMPREF1058_RS05065at 253.678 kb on + strand, within HMPREF1058_RS05065at 253.747 kb on - strand, within HMPREF1058_RS05065at 253.765 kb on - strand, within HMPREF1058_RS05065at 253.796 kb on + strand, within HMPREF1058_RS05065at 253.919 kb on + strand, within HMPREF1058_RS05065at 253.953 kb on - strand, within HMPREF1058_RS05065at 254.094 kb on + strand, within HMPREF1058_RS05065at 254.152 kb on - strand, within HMPREF1058_RS05065at 254.155 kb on + strand, within HMPREF1058_RS05065at 254.155 kb on + strand, within HMPREF1058_RS05065at 254.156 kb on - strand, within HMPREF1058_RS05065at 254.156 kb on - strand, within HMPREF1058_RS05065at 254.157 kb on + strand, within HMPREF1058_RS05065at 254.180 kb on - strand, within HMPREF1058_RS05065at 254.196 kb on + strand, within HMPREF1058_RS05065at 254.200 kb on - strand, within HMPREF1058_RS05065at 254.200 kb on - strandat 254.201 kb on + strand, within HMPREF1058_RS05065at 254.201 kb on + strand, within HMPREF1058_RS05065at 254.201 kb on + strandat 254.201 kb on + strand, within HMPREF1058_RS05065at 254.253 kb on - strand, within HMPREF1058_RS05065at 254.283 kb on + strand, within HMPREF1058_RS05065at 254.283 kb on + strand, within HMPREF1058_RS05065at 254.283 kb on - strand, within HMPREF1058_RS05065at 254.286 kb on + strand, within HMPREF1058_RS05065at 254.294 kb on + strand, within HMPREF1058_RS05065at 254.294 kb on + strand, within HMPREF1058_RS05065at 254.295 kb on - strand, within HMPREF1058_RS05065at 254.296 kb on + strand, within HMPREF1058_RS05065at 254.296 kb on + strand, within HMPREF1058_RS05065at 254.297 kb on - strand, within HMPREF1058_RS05065at 254.353 kb on + strand, within HMPREF1058_RS05065at 254.356 kb on + strand, within HMPREF1058_RS05065at 254.358 kb on + strand, within HMPREF1058_RS05065at 254.359 kb on - strand, within HMPREF1058_RS05065at 254.359 kb on - strand, within HMPREF1058_RS05065at 254.359 kb on - strand, within HMPREF1058_RS05065at 254.377 kb on - strand, within HMPREF1058_RS05065at 254.401 kb on + strand, within HMPREF1058_RS05065at 254.415 kb on + strand, within HMPREF1058_RS05065

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
remove
252,174 - HMPREF1058_RS05080 0.84 -2.7
252,283 - +0.2
252,300 + -0.0
252,305 + +0.7
252,306 - -0.4
252,310 + -0.7
252,471 + HMPREF1058_RS05075 0.28 -0.2
252,471 + HMPREF1058_RS05075 0.28 -1.6
252,472 - HMPREF1058_RS05075 0.28 +0.1
252,472 - HMPREF1058_RS05075 0.28 +3.8
252,476 - HMPREF1058_RS05075 0.29 -0.7
252,517 + HMPREF1058_RS05075 0.37 -1.7
252,642 - HMPREF1058_RS05075 0.63 -0.4
252,921 + -2.3
252,964 + +0.4
252,964 + -0.1
252,964 + +2.8
252,964 + +1.2
252,964 + -3.3
252,964 + -1.2
252,965 - -0.3
252,965 - -0.8
252,965 - -1.4
252,968 + -0.9
252,968 + -2.4
252,987 + +3.3
252,996 - +1.8
252,996 - -1.8
253,127 - HMPREF1058_RS05070 0.31 -1.4
253,127 - HMPREF1058_RS05070 0.31 -0.0
253,187 + HMPREF1058_RS05070 0.43 -1.8
253,248 + HMPREF1058_RS05070 0.56 -1.4
253,332 - HMPREF1058_RS05070 0.73 -1.1
253,345 - HMPREF1058_RS05070 0.75 -0.0
253,345 - HMPREF1058_RS05070 0.75 +0.6
253,427 + +0.2
253,427 + -1.0
253,436 + -1.6
253,483 + -0.4
253,484 - +0.4
253,485 + -1.1
253,486 - +0.8
253,488 - +0.0
253,551 - +0.2
253,603 + -0.8
253,604 - +0.2
253,604 - -0.0
253,610 + +0.2
253,632 + -0.5
253,647 + -0.2
253,648 - -0.8
253,654 - -2.1
253,654 - -0.7
253,678 + HMPREF1058_RS05065 0.11 -0.2
253,678 + HMPREF1058_RS05065 0.11 +1.8
253,747 - HMPREF1058_RS05065 0.15 -0.2
253,765 - HMPREF1058_RS05065 0.16 +1.4
253,796 + HMPREF1058_RS05065 0.18 -0.3
253,919 + HMPREF1058_RS05065 0.25 -0.7
253,953 - HMPREF1058_RS05065 0.27 -1.3
254,094 + HMPREF1058_RS05065 0.36 -1.5
254,152 - HMPREF1058_RS05065 0.39 -1.5
254,155 + HMPREF1058_RS05065 0.39 -2.3
254,155 + HMPREF1058_RS05065 0.39 +2.4
254,156 - HMPREF1058_RS05065 0.39 -0.0
254,156 - HMPREF1058_RS05065 0.39 -0.0
254,157 + HMPREF1058_RS05065 0.39 -1.1
254,180 - HMPREF1058_RS05065 0.41 -0.1
254,196 + HMPREF1058_RS05065 0.42 -0.7
254,200 - HMPREF1058_RS05065 0.42 +0.8
254,200 - -0.6
254,201 + HMPREF1058_RS05065 0.42 +0.6
254,201 + HMPREF1058_RS05065 0.42 -1.8
254,201 + +0.4
254,201 + HMPREF1058_RS05065 0.42 +0.8
254,253 - HMPREF1058_RS05065 0.45 -0.6
254,283 + HMPREF1058_RS05065 0.47 +0.4
254,283 + HMPREF1058_RS05065 0.47 -0.2
254,283 - HMPREF1058_RS05065 0.47 -0.8
254,286 + HMPREF1058_RS05065 0.47 -1.1
254,294 + HMPREF1058_RS05065 0.47 -0.7
254,294 + HMPREF1058_RS05065 0.47 -0.8
254,295 - HMPREF1058_RS05065 0.48 -1.2
254,296 + HMPREF1058_RS05065 0.48 -0.1
254,296 + HMPREF1058_RS05065 0.48 -0.7
254,297 - HMPREF1058_RS05065 0.48 +0.0
254,353 + HMPREF1058_RS05065 0.51 -0.0
254,356 + HMPREF1058_RS05065 0.51 +0.4
254,358 + HMPREF1058_RS05065 0.51 -1.0
254,359 - HMPREF1058_RS05065 0.51 -0.4
254,359 - HMPREF1058_RS05065 0.51 -0.0
254,359 - HMPREF1058_RS05065 0.51 +0.8
254,377 - HMPREF1058_RS05065 0.52 -2.2
254,401 + HMPREF1058_RS05065 0.54 +0.4
254,415 + HMPREF1058_RS05065 0.55 +0.5

Or see this region's nucleotide sequence