Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04585 and HMPREF1058_RS04580 are separated by 260 nucleotides HMPREF1058_RS04580 and HMPREF1058_RS04575 are separated by 18 nucleotides HMPREF1058_RS04575 and HMPREF1058_RS04570 overlap by 4 nucleotides
HMPREF1058_RS04585: HMPREF1058_RS04585 - hypothetical protein, at 4,728 to 5,516
_RS04585
HMPREF1058_RS04580: HMPREF1058_RS04580 - hypothetical protein, at 5,777 to 6,175
_RS04580
HMPREF1058_RS04575: HMPREF1058_RS04575 - hypothetical protein, at 6,194 to 6,637
_RS04575
HMPREF1058_RS04570: HMPREF1058_RS04570 - DUF1351 domain-containing protein, at 6,634 to 7,710
_RS04570
Position (kb) 6
7 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5.237 kb on + strand, within HMPREF1058_RS04585 at 5.237 kb on + strand, within HMPREF1058_RS04585 at 5.249 kb on + strand, within HMPREF1058_RS04585 at 5.413 kb on + strand, within HMPREF1058_RS04585 at 5.483 kb on + strand at 5.483 kb on + strand at 5.483 kb on + strand at 5.487 kb on + strand at 5.569 kb on + strand at 5.605 kb on + strand at 5.605 kb on + strand at 5.605 kb on + strand at 5.632 kb on + strand at 5.686 kb on + strand at 5.763 kb on + strand at 5.763 kb on + strand at 5.837 kb on + strand, within HMPREF1058_RS04580 at 5.908 kb on + strand, within HMPREF1058_RS04580 at 5.908 kb on + strand, within HMPREF1058_RS04580 at 5.926 kb on + strand, within HMPREF1058_RS04580 at 5.926 kb on + strand, within HMPREF1058_RS04580 at 6.282 kb on + strand, within HMPREF1058_RS04575 at 6.375 kb on + strand, within HMPREF1058_RS04575 at 6.494 kb on + strand, within HMPREF1058_RS04575 at 6.572 kb on + strand, within HMPREF1058_RS04575 at 6.594 kb on + strand at 6.740 kb on + strand at 6.876 kb on + strand, within HMPREF1058_RS04570 at 7.148 kb on + strand, within HMPREF1058_RS04570 at 7.151 kb on + strand, within HMPREF1058_RS04570 at 7.155 kb on + strand, within HMPREF1058_RS04570 at 7.243 kb on + strand, within HMPREF1058_RS04570 at 7.364 kb on + strand, within HMPREF1058_RS04570 at 7.581 kb on + strand, within HMPREF1058_RS04570 at 7.586 kb on + strand, within HMPREF1058_RS04570
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 5,237 + HMPREF1058_RS04585 0.65 -2.4 5,237 + HMPREF1058_RS04585 0.65 -0.8 5,249 + HMPREF1058_RS04585 0.66 -1.2 5,413 + HMPREF1058_RS04585 0.87 +0.9 5,483 + -1.1 5,483 + -0.5 5,483 + +3.0 5,487 + -0.1 5,569 + -0.3 5,605 + -2.2 5,605 + -0.5 5,605 + -1.5 5,632 + +1.1 5,686 + -0.1 5,763 + -1.6 5,763 + +0.1 5,837 + HMPREF1058_RS04580 0.15 +0.2 5,908 + HMPREF1058_RS04580 0.33 +0.4 5,908 + HMPREF1058_RS04580 0.33 -0.1 5,926 + HMPREF1058_RS04580 0.37 +0.4 5,926 + HMPREF1058_RS04580 0.37 -1.6 6,282 + HMPREF1058_RS04575 0.20 -2.0 6,375 + HMPREF1058_RS04575 0.41 -2.5 6,494 + HMPREF1058_RS04575 0.68 -1.6 6,572 + HMPREF1058_RS04575 0.85 -1.0 6,594 + +1.5 6,740 + -1.5 6,876 + HMPREF1058_RS04570 0.22 -0.1 7,148 + HMPREF1058_RS04570 0.48 -1.1 7,151 + HMPREF1058_RS04570 0.48 -1.4 7,155 + HMPREF1058_RS04570 0.48 -0.3 7,243 + HMPREF1058_RS04570 0.57 -1.7 7,364 + HMPREF1058_RS04570 0.68 -0.4 7,581 + HMPREF1058_RS04570 0.88 +0.1 7,586 + HMPREF1058_RS04570 0.88 +1.1
Or see this region's nucleotide sequence