Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04375

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
47,975	-		HMPREF1058_RS04385	0.62	-0.1
48,170	+				-0.2
48,170	+				+2.0
48,199	+				+0.7
48,200	-				+1.5
48,202	-				-1.4
48,207	+				-0.8
48,254	-				+1.7
48,261	+				+0.1
48,270	-				-1.8
48,290	-				+0.5
48,294	+				-1.4
48,294	+				-1.2
48,336	+		HMPREF1058_RS04380	0.12	+1.6
48,359	-		HMPREF1058_RS04380	0.15	+0.4
48,361	-		HMPREF1058_RS04380	0.16	-0.1
48,361	-		HMPREF1058_RS04380	0.16	-1.0
48,361	-		HMPREF1058_RS04380	0.16	-0.8
48,364	-		HMPREF1058_RS04380	0.16	-1.3
48,441	+		HMPREF1058_RS04380	0.29	-0.0
48,442	-		HMPREF1058_RS04380	0.29	+1.3
48,443	+		HMPREF1058_RS04380	0.30	-1.5
48,479	-		HMPREF1058_RS04380	0.36	+0.4
48,479	-		HMPREF1058_RS04380	0.36	+0.3
48,535	-		HMPREF1058_RS04380	0.45	+1.3
48,594	-		HMPREF1058_RS04380	0.55	+0.5
48,638	-		HMPREF1058_RS04380	0.63	+1.0
48,638	-		HMPREF1058_RS04380	0.63	-0.3
48,677	-		HMPREF1058_RS04380	0.69	+1.2
48,685	-		HMPREF1058_RS04380	0.71	+1.2
48,685	-		HMPREF1058_RS04380	0.71	+2.2
48,699	-		HMPREF1058_RS04380	0.73	-0.1
48,700	-		HMPREF1058_RS04380	0.73	-0.3
48,827	-				+1.3
48,874	+				-1.5
48,885	+				+0.4
48,886	-				+0.3
48,909	-				+0.7
48,970	+				-1.5
49,086	+		HMPREF1058_RS04375	0.13	-1.8
49,121	-		HMPREF1058_RS04375	0.17	-1.4
49,276	+		HMPREF1058_RS04375	0.34	-0.1
49,322	-		HMPREF1058_RS04375	0.39	-1.7
49,322	-		HMPREF1058_RS04375	0.39	-0.4
49,324	-		HMPREF1058_RS04375	0.40	-2.2
49,330	-		HMPREF1058_RS04375	0.40	-0.5
49,335	-		HMPREF1058_RS04375	0.41	-0.5
49,335	-		HMPREF1058_RS04375	0.41	+0.7
49,337	-		HMPREF1058_RS04375	0.41	-3.1
49,337	-		HMPREF1058_RS04375	0.41	-1.5
49,337	-		HMPREF1058_RS04375	0.41	-1.5
49,338	+		HMPREF1058_RS04375	0.41	-1.8
49,408	+		HMPREF1058_RS04375	0.49	-0.9
49,408	+		HMPREF1058_RS04375	0.49	-0.8
49,409	-		HMPREF1058_RS04375	0.49	-3.6
49,503	+		HMPREF1058_RS04375	0.60	-1.1
49,528	+		HMPREF1058_RS04375	0.62	-0.8
49,610	-		HMPREF1058_RS04375	0.72	-2.9
49,775	-				-2.6
49,833	+				-1.9
49,834	-				-0.3
49,860	+				-0.0
49,864	+				-1.1
49,865	-				+0.4
49,866	+				-0.3
49,876	+				-2.0
49,876	+				-1.5
49,877	-				-0.9
49,878	+				-3.6
49,878	+				+1.5
49,953	+				-0.6
49,954	-				+0.1
49,956	+				-0.3
49,956	+				+0.4
50,004	-		HMPREF1058_RS04370	0.13	-0.8
50,023	+		HMPREF1058_RS04370	0.15	+0.7
50,068	+		HMPREF1058_RS04370	0.19	+0.6
50,101	+		HMPREF1058_RS04370	0.22	-0.1
50,169	+		HMPREF1058_RS04370	0.29	-0.4
50,170	-		HMPREF1058_RS04370	0.29	-0.8
50,233	+		HMPREF1058_RS04370	0.35	+2.4
50,234	-		HMPREF1058_RS04370	0.35	+0.4
50,234	-		HMPREF1058_RS04370	0.35	+0.5
50,322	+		HMPREF1058_RS04370	0.44	-0.5
50,322	+		HMPREF1058_RS04370	0.44	-0.6
50,334	+		HMPREF1058_RS04370	0.45	+0.1
50,545	+		HMPREF1058_RS04370	0.65	-1.6
50,701	+		HMPREF1058_RS04370	0.80	-1.5
50,701	+		HMPREF1058_RS04370	0.80	-1.5
50,709	+		HMPREF1058_RS04370	0.81	-0.3
50,709	+		HMPREF1058_RS04370	0.81	-0.8
50,714	+		HMPREF1058_RS04370	0.82	+0.4
50,714	+		HMPREF1058_RS04370	0.82	+0.4
50,714	+		HMPREF1058_RS04370	0.82	-0.6
50,715	-		HMPREF1058_RS04370	0.82	+1.1
50,715	-		HMPREF1058_RS04370	0.82	-1.1
50,818	+				+0.4
50,818	+				-1.0
50,819	-				+1.1
50,851	-				+0.4