Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04270

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
77,653	+		HMPREF1058_RS04280	0.89	+1.6
77,654	-				+0.4
77,794	-				+2.4
77,805	-				+0.2
77,810	-				-0.1
77,933	-				+1.0
77,933	-				-0.4
78,010	+				-1.0
78,066	-				+0.5
78,084	-				-0.1
78,123	-		HMPREF1058_RS04275	0.13	-0.5
78,136	+		HMPREF1058_RS04275	0.19	+1.2
78,162	-		HMPREF1058_RS04275	0.29	-0.2
78,195	+		HMPREF1058_RS04275	0.43	-0.6
78,237	-		HMPREF1058_RS04275	0.60	+0.4
78,246	+		HMPREF1058_RS04275	0.63	-1.2
78,256	-		HMPREF1058_RS04275	0.67	-0.8
78,265	+		HMPREF1058_RS04275	0.71	+1.1
78,276	+		HMPREF1058_RS04275	0.76	+0.2
78,277	-		HMPREF1058_RS04275	0.76	-0.7
78,307	+		HMPREF1058_RS04275	0.88	+0.7
78,307	+		HMPREF1058_RS04275	0.88	+0.8
78,308	-		HMPREF1058_RS04275	0.89	-0.5
78,308	-		HMPREF1058_RS04275	0.89	+3.1
78,308	-		HMPREF1058_RS04275	0.89	-0.1
78,380	-				+0.3
78,392	-				+1.0
78,400	-				+0.9
78,477	-				+0.4
78,573	-				-1.9
78,575	-				-0.3
78,575	-				-0.1
78,583	+				-0.1
78,615	+				-2.2
78,626	+				+2.2
78,712	+		HMPREF1058_RS04270	0.16	-0.8
78,870	+		HMPREF1058_RS04270	0.45	-1.2
78,871	-		HMPREF1058_RS04270	0.46	-0.1
79,211	-				+1.1
79,230	+		HMPREF1058_RS04265	0.10	+1.0
79,271	-		HMPREF1058_RS04265	0.15	-0.2
79,275	+		HMPREF1058_RS04265	0.16	-0.1
79,280	+		HMPREF1058_RS04265	0.16	+0.7
79,281	-		HMPREF1058_RS04265	0.16	-0.8
79,350	+		HMPREF1058_RS04265	0.25	-0.5
79,383	-		HMPREF1058_RS04265	0.29	-0.2
79,402	+		HMPREF1058_RS04265	0.31	-0.0
79,402	+		HMPREF1058_RS04265	0.31	-1.1
79,447	+		HMPREF1058_RS04265	0.37	+0.5
79,448	-		HMPREF1058_RS04265	0.37	+0.7
79,448	-		HMPREF1058_RS04265	0.37	+1.2
79,489	-		HMPREF1058_RS04265	0.42	+0.1
79,508	+		HMPREF1058_RS04265	0.44	+2.1
79,519	-		HMPREF1058_RS04265	0.46	-2.5
79,582	-		HMPREF1058_RS04265	0.54	-1.0
79,582	-		HMPREF1058_RS04265	0.54	+0.9
79,585	+		HMPREF1058_RS04265	0.54	-0.6
79,585	+		HMPREF1058_RS04265	0.54	-2.3
79,586	-		HMPREF1058_RS04265	0.54	-1.2
79,586	-		HMPREF1058_RS04265	0.54	-1.9
79,586	-		HMPREF1058_RS04265	0.54	-0.0
79,586	-		HMPREF1058_RS04265	0.54	+0.1
79,586	-		HMPREF1058_RS04265	0.54	+0.3
79,586	-		HMPREF1058_RS04265	0.54	-1.4
79,664	+		HMPREF1058_RS04265	0.64	-1.5
79,664	+		HMPREF1058_RS04265	0.64	-0.1
79,664	+		HMPREF1058_RS04265	0.64	-0.2
79,681	-		HMPREF1058_RS04265	0.66	-0.9
79,681	-		HMPREF1058_RS04265	0.66	-1.3
79,732	-		HMPREF1058_RS04265	0.72	-0.9
79,758	+		HMPREF1058_RS04265	0.75	-0.8
79,759	-		HMPREF1058_RS04265	0.76	-1.7
79,759	-				-1.1
79,759	-		HMPREF1058_RS04265	0.76	+2.1
79,760	+		HMPREF1058_RS04265	0.76	-0.4
79,763	-		HMPREF1058_RS04265	0.76	-1.8
79,874	+		HMPREF1058_RS04265	0.90	-1.8
79,955	+				-0.3
79,955	+				-0.5
79,955	+				-2.5
79,955	+				+1.5
79,956	-				+0.6
79,956	-				-0.9
79,957	+				-0.2
79,960	+				-1.9
80,095	+				-1.0
80,113	+				-0.5