Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04065

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
122,395	-		HMPREF1058_RS04070	0.25	+0.7
122,415	+		HMPREF1058_RS04070	0.27	-1.3
122,533	-		HMPREF1058_RS04070	0.38	+2.7
122,533	-		HMPREF1058_RS04070	0.38	+2.1
122,579	+		HMPREF1058_RS04070	0.42	-1.8
122,613	-		HMPREF1058_RS04070	0.45	-0.6
122,654	-		HMPREF1058_RS04070	0.49	-3.8
122,667	-		HMPREF1058_RS04070	0.50	+0.1
122,800	+		HMPREF1058_RS04070	0.62	+0.1
122,939	-		HMPREF1058_RS04070	0.75	+1.7
123,175	+				-0.3
123,194	+				-1.2
123,196	+				-0.9
123,196	+				-1.6
123,196	+				-0.3
123,196	+				-0.4
123,196	+				-0.2
123,197	-				+0.1
123,284	+				-2.7
123,284	+				+0.1
123,285	-				+1.1
123,285	-				-0.3
123,289	-				+0.7
123,292	-				-0.3
123,486	+		HMPREF1058_RS04065	0.25	-2.1
123,529	+		HMPREF1058_RS04065	0.30	-0.1
124,089	+		HMPREF1058_RS04065	0.86	-0.5
124,274	+				+0.4
124,288	-				+0.4
124,909	-		HMPREF1058_RS04060	0.65	+0.4