Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04025

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS04030 and HMPREF1058_RS04025 are separated by 274 nucleotidesHMPREF1058_RS04025 and HMPREF1058_RS04020 are separated by 30 nucleotides HMPREF1058_RS04030: HMPREF1058_RS04030 - universal stress protein, at 129,889 to 131,016 _RS04030 HMPREF1058_RS04025: HMPREF1058_RS04025 - hypothetical protein, at 131,291 to 132,508 _RS04025 HMPREF1058_RS04020: HMPREF1058_RS04020 - DNA gyrase subunit A, at 132,539 to 135,106 _RS04020 Position (kb) 131 132 133Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 130.341 kb on + strand, within HMPREF1058_RS04030at 130.347 kb on - strandat 130.384 kb on - strand, within HMPREF1058_RS04030at 130.425 kb on - strand, within HMPREF1058_RS04030at 130.429 kb on + strand, within HMPREF1058_RS04030at 130.431 kb on + strand, within HMPREF1058_RS04030at 130.432 kb on - strand, within HMPREF1058_RS04030at 130.438 kb on - strand, within HMPREF1058_RS04030at 130.482 kb on + strand, within HMPREF1058_RS04030at 130.502 kb on + strand, within HMPREF1058_RS04030at 130.502 kb on + strand, within HMPREF1058_RS04030at 130.541 kb on + strand, within HMPREF1058_RS04030at 130.595 kb on + strand, within HMPREF1058_RS04030at 130.595 kb on + strand, within HMPREF1058_RS04030at 130.595 kb on + strand, within HMPREF1058_RS04030at 130.596 kb on - strand, within HMPREF1058_RS04030at 130.596 kb on - strand, within HMPREF1058_RS04030at 130.597 kb on + strand, within HMPREF1058_RS04030at 130.598 kb on - strand, within HMPREF1058_RS04030at 130.614 kb on + strand, within HMPREF1058_RS04030at 130.614 kb on + strand, within HMPREF1058_RS04030at 130.614 kb on + strand, within HMPREF1058_RS04030at 130.614 kb on + strand, within HMPREF1058_RS04030at 130.615 kb on - strand, within HMPREF1058_RS04030at 130.615 kb on - strand, within HMPREF1058_RS04030at 130.615 kb on - strand, within HMPREF1058_RS04030at 130.615 kb on - strand, within HMPREF1058_RS04030at 130.683 kb on - strand, within HMPREF1058_RS04030at 130.683 kb on - strand, within HMPREF1058_RS04030at 130.703 kb on + strand, within HMPREF1058_RS04030at 130.748 kb on + strand, within HMPREF1058_RS04030at 130.801 kb on + strand, within HMPREF1058_RS04030at 130.801 kb on + strand, within HMPREF1058_RS04030at 130.833 kb on - strand, within HMPREF1058_RS04030at 130.833 kb on - strand, within HMPREF1058_RS04030at 130.835 kb on - strand, within HMPREF1058_RS04030at 130.837 kb on + strand, within HMPREF1058_RS04030at 130.837 kb on + strand, within HMPREF1058_RS04030at 130.837 kb on + strand, within HMPREF1058_RS04030at 130.840 kb on - strand, within HMPREF1058_RS04030at 130.840 kb on - strand, within HMPREF1058_RS04030at 130.886 kb on + strand, within HMPREF1058_RS04030at 130.887 kb on - strand, within HMPREF1058_RS04030at 130.887 kb on - strand, within HMPREF1058_RS04030at 130.901 kb on + strand, within HMPREF1058_RS04030at 130.944 kb on + strandat 130.980 kb on - strandat 130.989 kb on + strandat 130.993 kb on - strandat 130.998 kb on + strandat 130.998 kb on + strandat 130.998 kb on + strandat 130.999 kb on - strandat 131.003 kb on + strandat 131.204 kb on + strandat 131.218 kb on + strandat 131.230 kb on - strandat 131.230 kb on - strandat 131.232 kb on + strandat 131.233 kb on - strandat 131.290 kb on - strandat 131.301 kb on - strandat 131.351 kb on - strandat 131.381 kb on - strandat 131.415 kb on + strand, within HMPREF1058_RS04025at 131.416 kb on - strand, within HMPREF1058_RS04025at 131.423 kb on - strand, within HMPREF1058_RS04025at 131.467 kb on - strand, within HMPREF1058_RS04025at 131.599 kb on + strand, within HMPREF1058_RS04025at 131.616 kb on + strandat 131.636 kb on + strand, within HMPREF1058_RS04025at 131.636 kb on + strand, within HMPREF1058_RS04025at 131.637 kb on - strand, within HMPREF1058_RS04025at 131.637 kb on - strand, within HMPREF1058_RS04025at 131.658 kb on + strand, within HMPREF1058_RS04025at 131.659 kb on - strandat 131.689 kb on + strand, within HMPREF1058_RS04025at 131.733 kb on + strand, within HMPREF1058_RS04025at 131.734 kb on - strand, within HMPREF1058_RS04025at 131.737 kb on - strand, within HMPREF1058_RS04025at 131.786 kb on - strand, within HMPREF1058_RS04025at 131.841 kb on + strand, within HMPREF1058_RS04025at 131.842 kb on - strand, within HMPREF1058_RS04025at 131.870 kb on - strand, within HMPREF1058_RS04025at 131.894 kb on - strand, within HMPREF1058_RS04025at 131.898 kb on - strand, within HMPREF1058_RS04025at 131.898 kb on - strand, within HMPREF1058_RS04025at 131.900 kb on - strand, within HMPREF1058_RS04025at 131.908 kb on - strand, within HMPREF1058_RS04025at 131.939 kb on - strand, within HMPREF1058_RS04025at 131.949 kb on - strand, within HMPREF1058_RS04025at 131.968 kb on - strand, within HMPREF1058_RS04025at 131.969 kb on + strand, within HMPREF1058_RS04025at 132.016 kb on + strand, within HMPREF1058_RS04025at 132.030 kb on - strand, within HMPREF1058_RS04025at 132.041 kb on + strand, within HMPREF1058_RS04025at 132.042 kb on - strand, within HMPREF1058_RS04025at 132.042 kb on - strand, within HMPREF1058_RS04025at 132.079 kb on + strand, within HMPREF1058_RS04025at 132.085 kb on - strand, within HMPREF1058_RS04025at 132.108 kb on - strand, within HMPREF1058_RS04025at 132.198 kb on - strand, within HMPREF1058_RS04025at 132.216 kb on + strand, within HMPREF1058_RS04025at 132.232 kb on + strand, within HMPREF1058_RS04025at 132.232 kb on + strand, within HMPREF1058_RS04025at 132.232 kb on + strandat 132.253 kb on + strand, within HMPREF1058_RS04025at 132.370 kb on + strand, within HMPREF1058_RS04025at 132.428 kb on - strandat 132.446 kb on + strandat 132.446 kb on + strandat 132.447 kb on - strandat 132.447 kb on - strandat 132.523 kb on - strandat 132.593 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
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130,341 + HMPREF1058_RS04030 0.40 +0.1
130,347 - -0.8
130,384 - HMPREF1058_RS04030 0.44 +0.4
130,425 - HMPREF1058_RS04030 0.48 +2.7
130,429 + HMPREF1058_RS04030 0.48 +0.8
130,431 + HMPREF1058_RS04030 0.48 +0.8
130,432 - HMPREF1058_RS04030 0.48 -0.6
130,438 - HMPREF1058_RS04030 0.49 +0.1
130,482 + HMPREF1058_RS04030 0.53 -0.1
130,502 + HMPREF1058_RS04030 0.54 +0.8
130,502 + HMPREF1058_RS04030 0.54 +1.1
130,541 + HMPREF1058_RS04030 0.58 +0.4
130,595 + HMPREF1058_RS04030 0.63 -0.6
130,595 + HMPREF1058_RS04030 0.63 -1.5
130,595 + HMPREF1058_RS04030 0.63 -1.2
130,596 - HMPREF1058_RS04030 0.63 +4.0
130,596 - HMPREF1058_RS04030 0.63 -1.4
130,597 + HMPREF1058_RS04030 0.63 +1.1
130,598 - HMPREF1058_RS04030 0.63 +0.7
130,614 + HMPREF1058_RS04030 0.64 -1.6
130,614 + HMPREF1058_RS04030 0.64 +1.3
130,614 + HMPREF1058_RS04030 0.64 -0.2
130,614 + HMPREF1058_RS04030 0.64 -2.0
130,615 - HMPREF1058_RS04030 0.64 -0.9
130,615 - HMPREF1058_RS04030 0.64 -0.5
130,615 - HMPREF1058_RS04030 0.64 -1.3
130,615 - HMPREF1058_RS04030 0.64 -1.5
130,683 - HMPREF1058_RS04030 0.70 +1.9
130,683 - HMPREF1058_RS04030 0.70 +0.1
130,703 + HMPREF1058_RS04030 0.72 +0.3
130,748 + HMPREF1058_RS04030 0.76 +0.6
130,801 + HMPREF1058_RS04030 0.81 +0.8
130,801 + HMPREF1058_RS04030 0.81 -0.1
130,833 - HMPREF1058_RS04030 0.84 -0.5
130,833 - HMPREF1058_RS04030 0.84 +1.2
130,835 - HMPREF1058_RS04030 0.84 +1.1
130,837 + HMPREF1058_RS04030 0.84 +0.1
130,837 + HMPREF1058_RS04030 0.84 +0.3
130,837 + HMPREF1058_RS04030 0.84 +1.7
130,840 - HMPREF1058_RS04030 0.84 -0.6
130,840 - HMPREF1058_RS04030 0.84 +1.0
130,886 + HMPREF1058_RS04030 0.88 +0.7
130,887 - HMPREF1058_RS04030 0.88 -1.2
130,887 - HMPREF1058_RS04030 0.88 +0.1
130,901 + HMPREF1058_RS04030 0.90 -1.5
130,944 + -0.8
130,980 - +2.1
130,989 + -0.2
130,993 - +0.5
130,998 + -1.1
130,998 + +0.1
130,998 + +0.3
130,999 - -0.8
131,003 + +0.9
131,204 + -1.2
131,218 + +0.5
131,230 - -0.4
131,230 - +1.1
131,232 + +0.7
131,233 - -0.4
131,290 - -0.5
131,301 - +1.0
131,351 - -2.7
131,381 - -0.8
131,415 + HMPREF1058_RS04025 0.10 +0.4
131,416 - HMPREF1058_RS04025 0.10 -2.8
131,423 - HMPREF1058_RS04025 0.11 +0.4
131,467 - HMPREF1058_RS04025 0.14 -0.5
131,599 + HMPREF1058_RS04025 0.25 -2.1
131,616 + +0.7
131,636 + HMPREF1058_RS04025 0.28 -0.8
131,636 + HMPREF1058_RS04025 0.28 +1.7
131,637 - HMPREF1058_RS04025 0.28 -0.4
131,637 - HMPREF1058_RS04025 0.28 -0.1
131,658 + HMPREF1058_RS04025 0.30 -1.1
131,659 - -0.3
131,689 + HMPREF1058_RS04025 0.33 -1.4
131,733 + HMPREF1058_RS04025 0.36 -1.5
131,734 - HMPREF1058_RS04025 0.36 +2.3
131,737 - HMPREF1058_RS04025 0.37 -1.8
131,786 - HMPREF1058_RS04025 0.41 -1.2
131,841 + HMPREF1058_RS04025 0.45 -1.5
131,842 - HMPREF1058_RS04025 0.45 +0.4
131,870 - HMPREF1058_RS04025 0.48 -1.8
131,894 - HMPREF1058_RS04025 0.50 -0.5
131,898 - HMPREF1058_RS04025 0.50 -0.8
131,898 - HMPREF1058_RS04025 0.50 -1.5
131,900 - HMPREF1058_RS04025 0.50 -0.3
131,908 - HMPREF1058_RS04025 0.51 +0.5
131,939 - HMPREF1058_RS04025 0.53 -3.4
131,949 - HMPREF1058_RS04025 0.54 -2.6
131,968 - HMPREF1058_RS04025 0.56 -3.4
131,969 + HMPREF1058_RS04025 0.56 +1.7
132,016 + HMPREF1058_RS04025 0.60 -2.0
132,030 - HMPREF1058_RS04025 0.61 -1.5
132,041 + HMPREF1058_RS04025 0.62 -1.8
132,042 - HMPREF1058_RS04025 0.62 -0.1
132,042 - HMPREF1058_RS04025 0.62 +0.3
132,079 + HMPREF1058_RS04025 0.65 -0.6
132,085 - HMPREF1058_RS04025 0.65 +0.4
132,108 - HMPREF1058_RS04025 0.67 -2.9
132,198 - HMPREF1058_RS04025 0.74 -2.0
132,216 + HMPREF1058_RS04025 0.76 +0.1
132,232 + HMPREF1058_RS04025 0.77 -0.6
132,232 + HMPREF1058_RS04025 0.77 -0.9
132,232 + -0.8
132,253 + HMPREF1058_RS04025 0.79 +0.5
132,370 + HMPREF1058_RS04025 0.89 +0.5
132,428 - -0.1
132,446 + -0.1
132,446 + -0.5
132,447 - +1.7
132,447 - -3.3
132,523 - -0.7
132,593 - +0.2

Or see this region's nucleotide sequence