Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03810 and HMPREF1058_RS03805 are separated by 9 nucleotides HMPREF1058_RS03805 and HMPREF1058_RS03800 are separated by 246 nucleotides HMPREF1058_RS03800 and HMPREF1058_RS03795 are separated by 198 nucleotides
HMPREF1058_RS03810: HMPREF1058_RS03810 - flavin reductase family protein, at 181,439 to 182,026
_RS03810
HMPREF1058_RS03805: HMPREF1058_RS03805 - PorT family protein, at 182,036 to 182,755
_RS03805
HMPREF1058_RS03800: HMPREF1058_RS03800 - serine hydroxymethyltransferase, at 183,002 to 184,282
_RS03800
HMPREF1058_RS03795: HMPREF1058_RS03795 - MATE family efflux transporter, at 184,481 to 185,824
_RS03795
Position (kb) 183
184
185 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 182.052 kb on + strand at 182.174 kb on - strand, within HMPREF1058_RS03805 at 182.190 kb on + strand, within HMPREF1058_RS03805 at 182.227 kb on + strand, within HMPREF1058_RS03805 at 182.297 kb on - strand, within HMPREF1058_RS03805 at 182.300 kb on + strand, within HMPREF1058_RS03805 at 182.301 kb on - strand, within HMPREF1058_RS03805 at 182.306 kb on - strand, within HMPREF1058_RS03805 at 182.309 kb on + strand, within HMPREF1058_RS03805 at 182.403 kb on + strand, within HMPREF1058_RS03805 at 182.407 kb on + strand, within HMPREF1058_RS03805 at 182.413 kb on - strand, within HMPREF1058_RS03805 at 182.422 kb on + strand, within HMPREF1058_RS03805 at 182.423 kb on - strand, within HMPREF1058_RS03805 at 182.484 kb on + strand, within HMPREF1058_RS03805 at 182.484 kb on + strand, within HMPREF1058_RS03805 at 182.562 kb on + strand, within HMPREF1058_RS03805 at 182.563 kb on - strand, within HMPREF1058_RS03805 at 182.596 kb on + strand, within HMPREF1058_RS03805 at 182.601 kb on + strand, within HMPREF1058_RS03805 at 182.601 kb on + strand, within HMPREF1058_RS03805 at 182.601 kb on + strand, within HMPREF1058_RS03805 at 182.728 kb on - strand at 182.746 kb on + strand at 182.772 kb on + strand at 182.785 kb on + strand at 182.797 kb on + strand at 182.798 kb on - strand at 182.857 kb on + strand at 182.861 kb on - strand at 182.910 kb on - strand at 182.933 kb on - strand at 182.939 kb on + strand at 183.105 kb on + strand at 183.106 kb on - strand at 183.140 kb on + strand, within HMPREF1058_RS03800 at 183.141 kb on - strand, within HMPREF1058_RS03800 at 183.141 kb on - strand, within HMPREF1058_RS03800 at 183.170 kb on + strand, within HMPREF1058_RS03800 at 183.255 kb on + strand, within HMPREF1058_RS03800 at 183.255 kb on + strand, within HMPREF1058_RS03800 at 183.255 kb on + strand, within HMPREF1058_RS03800 at 183.256 kb on - strand, within HMPREF1058_RS03800 at 183.256 kb on - strand, within HMPREF1058_RS03800 at 183.292 kb on - strand, within HMPREF1058_RS03800 at 183.397 kb on + strand, within HMPREF1058_RS03800 at 183.410 kb on + strand, within HMPREF1058_RS03800 at 183.438 kb on + strand, within HMPREF1058_RS03800 at 183.510 kb on - strand, within HMPREF1058_RS03800 at 183.528 kb on - strand, within HMPREF1058_RS03800 at 183.536 kb on - strand, within HMPREF1058_RS03800 at 183.636 kb on - strand, within HMPREF1058_RS03800 at 183.636 kb on - strand, within HMPREF1058_RS03800 at 183.664 kb on + strand, within HMPREF1058_RS03800 at 183.786 kb on + strand, within HMPREF1058_RS03800 at 183.891 kb on + strand, within HMPREF1058_RS03800 at 183.892 kb on - strand, within HMPREF1058_RS03800 at 183.940 kb on + strand, within HMPREF1058_RS03800 at 184.219 kb on - strand at 184.280 kb on + strand at 184.300 kb on + strand at 184.303 kb on - strand at 184.309 kb on - strand at 184.387 kb on + strand at 184.387 kb on + strand at 184.577 kb on + strand at 184.577 kb on + strand at 184.579 kb on + strand at 184.579 kb on + strand at 184.580 kb on - strand at 184.580 kb on - strand at 184.655 kb on - strand, within HMPREF1058_RS03795 at 184.673 kb on - strand, within HMPREF1058_RS03795 at 184.693 kb on - strand, within HMPREF1058_RS03795 at 184.782 kb on + strand, within HMPREF1058_RS03795 at 184.817 kb on - strand, within HMPREF1058_RS03795 at 184.840 kb on + strand, within HMPREF1058_RS03795 at 184.841 kb on - strand, within HMPREF1058_RS03795 at 184.863 kb on + strand, within HMPREF1058_RS03795 at 185.011 kb on - strand, within HMPREF1058_RS03795 at 185.014 kb on - strand, within HMPREF1058_RS03795 at 185.094 kb on + strand, within HMPREF1058_RS03795 at 185.179 kb on + strand, within HMPREF1058_RS03795 at 185.179 kb on + strand, within HMPREF1058_RS03795 at 185.179 kb on + strand, within HMPREF1058_RS03795 at 185.179 kb on + strand, within HMPREF1058_RS03795 at 185.180 kb on - strand, within HMPREF1058_RS03795
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 182,052 + +0.3 182,174 - HMPREF1058_RS03805 0.19 -0.1 182,190 + HMPREF1058_RS03805 0.21 -0.0 182,227 + HMPREF1058_RS03805 0.27 -1.4 182,297 - HMPREF1058_RS03805 0.36 -0.2 182,300 + HMPREF1058_RS03805 0.37 +1.7 182,301 - HMPREF1058_RS03805 0.37 -0.2 182,306 - HMPREF1058_RS03805 0.38 -2.0 182,309 + HMPREF1058_RS03805 0.38 -1.8 182,403 + HMPREF1058_RS03805 0.51 +0.7 182,407 + HMPREF1058_RS03805 0.52 +1.0 182,413 - HMPREF1058_RS03805 0.52 -0.3 182,422 + HMPREF1058_RS03805 0.54 -0.7 182,423 - HMPREF1058_RS03805 0.54 -1.2 182,484 + HMPREF1058_RS03805 0.62 +0.2 182,484 + HMPREF1058_RS03805 0.62 -0.8 182,562 + HMPREF1058_RS03805 0.73 +2.7 182,563 - HMPREF1058_RS03805 0.73 +1.5 182,596 + HMPREF1058_RS03805 0.78 -0.1 182,601 + HMPREF1058_RS03805 0.78 -2.8 182,601 + HMPREF1058_RS03805 0.78 +1.1 182,601 + HMPREF1058_RS03805 0.78 +1.5 182,728 - -1.2 182,746 + +0.4 182,772 + -0.1 182,785 + -0.0 182,797 + +0.4 182,798 - -2.8 182,857 + -0.8 182,861 - -0.3 182,910 - +1.3 182,933 - -0.1 182,939 + -1.8 183,105 + -2.4 183,106 - -2.5 183,140 + HMPREF1058_RS03800 0.11 -1.0 183,141 - HMPREF1058_RS03800 0.11 -1.5 183,141 - HMPREF1058_RS03800 0.11 -0.3 183,170 + HMPREF1058_RS03800 0.13 -1.0 183,255 + HMPREF1058_RS03800 0.20 -3.2 183,255 + HMPREF1058_RS03800 0.20 -3.1 183,255 + HMPREF1058_RS03800 0.20 -2.4 183,256 - HMPREF1058_RS03800 0.20 -3.5 183,256 - HMPREF1058_RS03800 0.20 +0.0 183,292 - HMPREF1058_RS03800 0.23 -1.9 183,397 + HMPREF1058_RS03800 0.31 -2.9 183,410 + HMPREF1058_RS03800 0.32 -0.6 183,438 + HMPREF1058_RS03800 0.34 -2.9 183,510 - HMPREF1058_RS03800 0.40 -1.2 183,528 - HMPREF1058_RS03800 0.41 -0.8 183,536 - HMPREF1058_RS03800 0.42 -0.9 183,636 - HMPREF1058_RS03800 0.49 -3.1 183,636 - HMPREF1058_RS03800 0.49 -2.2 183,664 + HMPREF1058_RS03800 0.52 -1.9 183,786 + HMPREF1058_RS03800 0.61 -2.9 183,891 + HMPREF1058_RS03800 0.69 -2.8 183,892 - HMPREF1058_RS03800 0.69 -1.5 183,940 + HMPREF1058_RS03800 0.73 -2.0 184,219 - -2.0 184,280 + +0.4 184,300 + -0.1 184,303 - -0.1 184,309 - +0.0 184,387 + -0.3 184,387 + +2.0 184,577 + +1.7 184,577 + -0.6 184,579 + -1.3 184,579 + +1.5 184,580 - +0.5 184,580 - -1.8 184,655 - HMPREF1058_RS03795 0.13 -0.0 184,673 - HMPREF1058_RS03795 0.14 -1.1 184,693 - HMPREF1058_RS03795 0.16 +1.1 184,782 + HMPREF1058_RS03795 0.22 +0.9 184,817 - HMPREF1058_RS03795 0.25 -0.2 184,840 + HMPREF1058_RS03795 0.27 +0.2 184,841 - HMPREF1058_RS03795 0.27 +0.4 184,863 + HMPREF1058_RS03795 0.28 -0.5 185,011 - HMPREF1058_RS03795 0.39 +0.7 185,014 - HMPREF1058_RS03795 0.40 -0.7 185,094 + HMPREF1058_RS03795 0.46 -0.6 185,179 + HMPREF1058_RS03795 0.52 +0.9 185,179 + HMPREF1058_RS03795 0.52 +1.4 185,179 + HMPREF1058_RS03795 0.52 -1.8 185,179 + HMPREF1058_RS03795 0.52 -0.9 185,180 - HMPREF1058_RS03795 0.52 +1.6
Or see this region's nucleotide sequence