Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03635 and HMPREF1058_RS03630 are separated by 185 nucleotides HMPREF1058_RS03630 and HMPREF1058_RS03625 overlap by 1 nucleotides HMPREF1058_RS03625 and HMPREF1058_RS03620 are separated by 25 nucleotides
HMPREF1058_RS03635: HMPREF1058_RS03635 - YjbH domain-containing protein, at 233,415 to 234,224
_RS03635
HMPREF1058_RS03630: HMPREF1058_RS03630 - WecB/TagA/CpsF family glycosyltransferase, at 234,410 to 235,123
_RS03630
HMPREF1058_RS03625: HMPREF1058_RS03625 - polysaccharide pyruvyl transferase family protein, at 235,123 to 236,199
_RS03625
HMPREF1058_RS03620: HMPREF1058_RS03620 - glycosyltransferase, at 236,225 to 237,211
_RS03620
Position (kb) 235
236
237 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 234.253 kb on - strand at 234.342 kb on + strand at 234.343 kb on - strand at 234.349 kb on - strand at 234.475 kb on + strand at 234.475 kb on + strand at 234.476 kb on - strand at 234.495 kb on + strand, within HMPREF1058_RS03630 at 234.495 kb on + strand, within HMPREF1058_RS03630 at 234.495 kb on + strand, within HMPREF1058_RS03630 at 234.496 kb on - strand, within HMPREF1058_RS03630 at 234.592 kb on + strand, within HMPREF1058_RS03630 at 234.592 kb on + strand, within HMPREF1058_RS03630 at 234.665 kb on + strand, within HMPREF1058_RS03630 at 234.696 kb on - strand, within HMPREF1058_RS03630 at 234.832 kb on + strand, within HMPREF1058_RS03630 at 234.835 kb on - strand, within HMPREF1058_RS03630 at 234.862 kb on - strand, within HMPREF1058_RS03630 at 234.971 kb on - strand, within HMPREF1058_RS03630 at 234.990 kb on - strand, within HMPREF1058_RS03630 at 235.042 kb on - strand, within HMPREF1058_RS03630 at 235.101 kb on + strand at 235.105 kb on + strand at 235.146 kb on - strand at 235.197 kb on - strand at 235.231 kb on - strand, within HMPREF1058_RS03625 at 235.375 kb on - strand, within HMPREF1058_RS03625 at 235.380 kb on - strand, within HMPREF1058_RS03625 at 235.393 kb on - strand, within HMPREF1058_RS03625 at 235.405 kb on + strand, within HMPREF1058_RS03625 at 235.542 kb on - strand, within HMPREF1058_RS03625 at 235.558 kb on - strand, within HMPREF1058_RS03625 at 235.596 kb on + strand, within HMPREF1058_RS03625 at 235.596 kb on + strand, within HMPREF1058_RS03625 at 235.671 kb on + strand, within HMPREF1058_RS03625 at 235.711 kb on + strand, within HMPREF1058_RS03625 at 235.748 kb on - strand, within HMPREF1058_RS03625 at 235.758 kb on + strand, within HMPREF1058_RS03625 at 235.758 kb on + strand, within HMPREF1058_RS03625 at 235.784 kb on + strand, within HMPREF1058_RS03625 at 235.788 kb on + strand, within HMPREF1058_RS03625 at 235.868 kb on - strand, within HMPREF1058_RS03625 at 235.868 kb on - strand, within HMPREF1058_RS03625 at 235.899 kb on - strand, within HMPREF1058_RS03625 at 235.909 kb on - strand, within HMPREF1058_RS03625 at 235.934 kb on + strand, within HMPREF1058_RS03625 at 236.034 kb on + strand, within HMPREF1058_RS03625 at 236.086 kb on - strand, within HMPREF1058_RS03625 at 236.104 kb on - strand at 236.110 kb on + strand at 236.160 kb on - strand at 236.191 kb on + strand at 236.218 kb on + strand at 236.218 kb on + strand at 236.218 kb on + strand at 236.239 kb on - strand at 236.239 kb on - strand at 236.248 kb on + strand at 236.259 kb on - strand at 236.276 kb on - strand at 236.283 kb on - strand at 236.350 kb on - strand, within HMPREF1058_RS03620 at 236.379 kb on + strand, within HMPREF1058_RS03620 at 236.380 kb on - strand, within HMPREF1058_RS03620 at 236.380 kb on - strand, within HMPREF1058_RS03620 at 236.384 kb on - strand, within HMPREF1058_RS03620 at 236.392 kb on - strand, within HMPREF1058_RS03620 at 236.395 kb on + strand, within HMPREF1058_RS03620 at 236.396 kb on - strand, within HMPREF1058_RS03620 at 236.426 kb on - strand, within HMPREF1058_RS03620 at 236.427 kb on + strand, within HMPREF1058_RS03620 at 236.427 kb on + strand, within HMPREF1058_RS03620 at 236.428 kb on - strand, within HMPREF1058_RS03620 at 236.428 kb on - strand, within HMPREF1058_RS03620 at 236.431 kb on + strand, within HMPREF1058_RS03620 at 236.431 kb on + strand, within HMPREF1058_RS03620 at 236.431 kb on + strand, within HMPREF1058_RS03620 at 236.432 kb on - strand, within HMPREF1058_RS03620 at 236.443 kb on + strand, within HMPREF1058_RS03620 at 236.488 kb on + strand, within HMPREF1058_RS03620 at 236.533 kb on + strand, within HMPREF1058_RS03620 at 236.596 kb on - strand, within HMPREF1058_RS03620 at 236.597 kb on + strand, within HMPREF1058_RS03620 at 236.692 kb on + strand, within HMPREF1058_RS03620 at 236.759 kb on + strand, within HMPREF1058_RS03620 at 236.760 kb on - strand, within HMPREF1058_RS03620 at 236.801 kb on + strand, within HMPREF1058_RS03620 at 236.801 kb on + strand, within HMPREF1058_RS03620 at 236.802 kb on - strand, within HMPREF1058_RS03620 at 236.803 kb on + strand, within HMPREF1058_RS03620 at 236.803 kb on + strand, within HMPREF1058_RS03620 at 236.803 kb on + strand, within HMPREF1058_RS03620 at 236.803 kb on + strand, within HMPREF1058_RS03620 at 236.804 kb on - strand, within HMPREF1058_RS03620 at 236.804 kb on - strand, within HMPREF1058_RS03620 at 236.842 kb on + strand, within HMPREF1058_RS03620 at 236.846 kb on - strand, within HMPREF1058_RS03620 at 236.867 kb on + strand, within HMPREF1058_RS03620 at 236.970 kb on - strand, within HMPREF1058_RS03620 at 236.970 kb on - strand, within HMPREF1058_RS03620 at 236.972 kb on - strand, within HMPREF1058_RS03620 at 236.999 kb on + strand, within HMPREF1058_RS03620 at 237.000 kb on - strand, within HMPREF1058_RS03620 at 237.000 kb on - strand, within HMPREF1058_RS03620 at 237.116 kb on - strand at 237.132 kb on - strand at 237.155 kb on - strand at 237.182 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 234,253 - +1.2 234,342 + +1.5 234,343 - -1.2 234,349 - +0.8 234,475 + -0.5 234,475 + +0.8 234,476 - -1.2 234,495 + HMPREF1058_RS03630 0.12 +0.0 234,495 + HMPREF1058_RS03630 0.12 +2.7 234,495 + HMPREF1058_RS03630 0.12 -0.5 234,496 - HMPREF1058_RS03630 0.12 +2.7 234,592 + HMPREF1058_RS03630 0.25 +1.3 234,592 + HMPREF1058_RS03630 0.25 +2.0 234,665 + HMPREF1058_RS03630 0.36 +2.7 234,696 - HMPREF1058_RS03630 0.40 +0.8 234,832 + HMPREF1058_RS03630 0.59 -0.3 234,835 - HMPREF1058_RS03630 0.60 +2.7 234,862 - HMPREF1058_RS03630 0.63 -0.2 234,971 - HMPREF1058_RS03630 0.79 -0.9 234,990 - HMPREF1058_RS03630 0.81 +0.7 235,042 - HMPREF1058_RS03630 0.89 +0.0 235,101 + -0.9 235,105 + -0.0 235,146 - -0.5 235,197 - -1.4 235,231 - HMPREF1058_RS03625 0.10 -0.1 235,375 - HMPREF1058_RS03625 0.23 +0.9 235,380 - HMPREF1058_RS03625 0.24 +0.4 235,393 - HMPREF1058_RS03625 0.25 +3.2 235,405 + HMPREF1058_RS03625 0.26 -0.7 235,542 - HMPREF1058_RS03625 0.39 +1.4 235,558 - HMPREF1058_RS03625 0.40 +2.9 235,596 + HMPREF1058_RS03625 0.44 +2.7 235,596 + HMPREF1058_RS03625 0.44 +2.3 235,671 + HMPREF1058_RS03625 0.51 +3.4 235,711 + HMPREF1058_RS03625 0.55 +1.0 235,748 - HMPREF1058_RS03625 0.58 +1.1 235,758 + HMPREF1058_RS03625 0.59 +0.4 235,758 + HMPREF1058_RS03625 0.59 -0.6 235,784 + HMPREF1058_RS03625 0.61 +0.1 235,788 + HMPREF1058_RS03625 0.62 -0.7 235,868 - HMPREF1058_RS03625 0.69 -1.8 235,868 - HMPREF1058_RS03625 0.69 +1.6 235,899 - HMPREF1058_RS03625 0.72 -0.8 235,909 - HMPREF1058_RS03625 0.73 +0.2 235,934 + HMPREF1058_RS03625 0.75 -0.6 236,034 + HMPREF1058_RS03625 0.85 -0.8 236,086 - HMPREF1058_RS03625 0.89 -0.9 236,104 - +0.5 236,110 + +0.2 236,160 - +0.7 236,191 + +0.3 236,218 + -0.7 236,218 + -1.8 236,218 + -1.5 236,239 - +2.2 236,239 - +1.6 236,248 + -0.1 236,259 - +1.7 236,276 - +1.7 236,283 - +0.1 236,350 - HMPREF1058_RS03620 0.13 +4.4 236,379 + HMPREF1058_RS03620 0.16 +2.9 236,380 - HMPREF1058_RS03620 0.16 +1.5 236,380 - HMPREF1058_RS03620 0.16 +1.0 236,384 - HMPREF1058_RS03620 0.16 +0.5 236,392 - HMPREF1058_RS03620 0.17 +0.6 236,395 + HMPREF1058_RS03620 0.17 -2.1 236,396 - HMPREF1058_RS03620 0.17 -0.5 236,426 - HMPREF1058_RS03620 0.20 +1.0 236,427 + HMPREF1058_RS03620 0.20 -1.2 236,427 + HMPREF1058_RS03620 0.20 +1.7 236,428 - HMPREF1058_RS03620 0.21 +1.3 236,428 - HMPREF1058_RS03620 0.21 +1.4 236,431 + HMPREF1058_RS03620 0.21 +2.7 236,431 + HMPREF1058_RS03620 0.21 +0.3 236,431 + HMPREF1058_RS03620 0.21 +1.7 236,432 - HMPREF1058_RS03620 0.21 +0.9 236,443 + HMPREF1058_RS03620 0.22 +1.7 236,488 + HMPREF1058_RS03620 0.27 -0.5 236,533 + HMPREF1058_RS03620 0.31 -0.4 236,596 - HMPREF1058_RS03620 0.38 -0.3 236,597 + HMPREF1058_RS03620 0.38 +0.5 236,692 + HMPREF1058_RS03620 0.47 +1.7 236,759 + HMPREF1058_RS03620 0.54 -0.6 236,760 - HMPREF1058_RS03620 0.54 -0.4 236,801 + HMPREF1058_RS03620 0.58 -1.1 236,801 + HMPREF1058_RS03620 0.58 +0.0 236,802 - HMPREF1058_RS03620 0.58 -0.2 236,803 + HMPREF1058_RS03620 0.59 +0.8 236,803 + HMPREF1058_RS03620 0.59 -0.4 236,803 + HMPREF1058_RS03620 0.59 +0.4 236,803 + HMPREF1058_RS03620 0.59 +1.2 236,804 - HMPREF1058_RS03620 0.59 +0.8 236,804 - HMPREF1058_RS03620 0.59 +2.7 236,842 + HMPREF1058_RS03620 0.63 +0.2 236,846 - HMPREF1058_RS03620 0.63 +1.8 236,867 + HMPREF1058_RS03620 0.65 -0.0 236,970 - HMPREF1058_RS03620 0.75 -2.4 236,970 - HMPREF1058_RS03620 0.75 -1.5 236,972 - HMPREF1058_RS03620 0.76 -0.5 236,999 + HMPREF1058_RS03620 0.78 -0.1 237,000 - HMPREF1058_RS03620 0.79 +1.0 237,000 - HMPREF1058_RS03620 0.79 +0.2 237,116 - +0.2 237,132 - -0.2 237,155 - -0.1 237,182 + -1.3
Or see this region's nucleotide sequence