Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03550 and HMPREF1058_RS03545 are separated by 36 nucleotides HMPREF1058_RS03545 and HMPREF1058_RS03540 are separated by 115 nucleotides
HMPREF1058_RS03550: HMPREF1058_RS03550 - AAA family ATPase, at 249,205 to 250,977
_RS03550
HMPREF1058_RS03545: HMPREF1058_RS03545 - sigma-54-dependent Fis family transcriptional regulator, at 251,014 to 252,354
_RS03545
HMPREF1058_RS03540: HMPREF1058_RS03540 - sensor histidine kinase, at 252,470 to 253,771
_RS03540
Position (kb) 251
252
253 Strain fitness (log2 ratio) -2
-1
0
1
2 at 250.445 kb on + strand, within HMPREF1058_RS03550 at 250.445 kb on + strand, within HMPREF1058_RS03550 at 250.445 kb on + strand, within HMPREF1058_RS03550 at 250.447 kb on + strand, within HMPREF1058_RS03550 at 250.453 kb on + strand, within HMPREF1058_RS03550 at 250.453 kb on + strand, within HMPREF1058_RS03550 at 250.468 kb on + strand, within HMPREF1058_RS03550 at 250.552 kb on + strand, within HMPREF1058_RS03550 at 250.666 kb on + strand, within HMPREF1058_RS03550 at 250.759 kb on + strand, within HMPREF1058_RS03550 at 250.759 kb on + strand, within HMPREF1058_RS03550 at 250.766 kb on + strand, within HMPREF1058_RS03550 at 250.949 kb on + strand at 250.949 kb on + strand at 250.952 kb on + strand at 250.953 kb on - strand at 250.955 kb on - strand at 250.975 kb on + strand at 250.975 kb on + strand at 250.975 kb on + strand at 251.442 kb on + strand, within HMPREF1058_RS03545 at 251.442 kb on + strand, within HMPREF1058_RS03545 at 251.602 kb on - strand, within HMPREF1058_RS03545 at 251.665 kb on - strand, within HMPREF1058_RS03545 at 251.783 kb on + strand, within HMPREF1058_RS03545 at 251.850 kb on - strand, within HMPREF1058_RS03545 at 251.850 kb on - strand, within HMPREF1058_RS03545 at 251.850 kb on - strand at 251.934 kb on + strand, within HMPREF1058_RS03545 at 251.979 kb on + strand, within HMPREF1058_RS03545 at 251.982 kb on + strand, within HMPREF1058_RS03545 at 252.151 kb on - strand, within HMPREF1058_RS03545 at 252.327 kb on + strand at 252.328 kb on - strand at 252.330 kb on + strand at 252.330 kb on + strand at 252.358 kb on - strand at 252.432 kb on + strand at 252.464 kb on + strand at 252.464 kb on + strand at 252.496 kb on + strand at 252.531 kb on + strand at 252.565 kb on - strand at 252.633 kb on + strand, within HMPREF1058_RS03540
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 250,445 + HMPREF1058_RS03550 0.70 +1.0 250,445 + HMPREF1058_RS03550 0.70 +0.2 250,445 + HMPREF1058_RS03550 0.70 -0.1 250,447 + HMPREF1058_RS03550 0.70 -0.9 250,453 + HMPREF1058_RS03550 0.70 +0.9 250,453 + HMPREF1058_RS03550 0.70 -1.9 250,468 + HMPREF1058_RS03550 0.71 -0.8 250,552 + HMPREF1058_RS03550 0.76 +0.3 250,666 + HMPREF1058_RS03550 0.82 -0.1 250,759 + HMPREF1058_RS03550 0.88 +2.5 250,759 + HMPREF1058_RS03550 0.88 +0.1 250,766 + HMPREF1058_RS03550 0.88 -2.1 250,949 + -0.7 250,949 + +0.8 250,952 + +0.1 250,953 - -0.3 250,955 - -0.3 250,975 + -0.9 250,975 + -1.5 250,975 + -0.9 251,442 + HMPREF1058_RS03545 0.32 -0.9 251,442 + HMPREF1058_RS03545 0.32 -1.5 251,602 - HMPREF1058_RS03545 0.44 -1.7 251,665 - HMPREF1058_RS03545 0.49 -1.0 251,783 + HMPREF1058_RS03545 0.57 -0.4 251,850 - HMPREF1058_RS03545 0.62 +1.1 251,850 - HMPREF1058_RS03545 0.62 -0.9 251,850 - -0.5 251,934 + HMPREF1058_RS03545 0.69 -2.0 251,979 + HMPREF1058_RS03545 0.72 -0.7 251,982 + HMPREF1058_RS03545 0.72 +0.2 252,151 - HMPREF1058_RS03545 0.85 -0.3 252,327 + -0.6 252,328 - +1.7 252,330 + +0.6 252,330 + -0.4 252,358 - +0.4 252,432 + -0.7 252,464 + -0.2 252,464 + -0.0 252,496 + +1.4 252,531 + +0.9 252,565 - +1.3 252,633 + HMPREF1058_RS03540 0.13 +0.0
Or see this region's nucleotide sequence