Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02975

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS02980 and HMPREF1058_RS02975 are separated by 2 nucleotidesHMPREF1058_RS02975 and HMPREF1058_RS02970 are separated by 21 nucleotides HMPREF1058_RS02980: HMPREF1058_RS02980 - hypothetical protein, at 39,679 to 41,346 _RS02980 HMPREF1058_RS02975: HMPREF1058_RS02975 - hypothetical protein, at 41,349 to 41,645 _RS02975 HMPREF1058_RS02970: HMPREF1058_RS02970 - DNA mismatch repair endonuclease MutL, at 41,667 to 43,535 _RS02970 Position (kb) 41 42Strain fitness (log2 ratio) -3 -2 -1 0 1at 41.344 kb on + strandat 41.396 kb on + strand, within HMPREF1058_RS02975at 41.396 kb on + strand, within HMPREF1058_RS02975at 41.664 kb on + strandat 41.664 kb on + strandat 41.666 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
remove
41,344 + +1.0
41,396 + HMPREF1058_RS02975 0.16 -3.7
41,396 + HMPREF1058_RS02975 0.16 -2.6
41,664 + -0.1
41,664 + +0.8
41,666 + -1.1

Or see this region's nucleotide sequence