Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02410 and HMPREF1058_RS02405 are separated by 9 nucleotides HMPREF1058_RS02405 and HMPREF1058_RS02400 are separated by 285 nucleotides
HMPREF1058_RS02410: HMPREF1058_RS02410 - methylmalonyl-CoA mutase, at 194,612 to 196,762
_RS02410
HMPREF1058_RS02405: HMPREF1058_RS02405 - methylmalonyl-CoA mutase small subunit, at 196,772 to 198,682
_RS02405
HMPREF1058_RS02400: HMPREF1058_RS02400 - putative transporter, at 198,968 to 200,638
_RS02400
Position (kb) 196
197
198
199 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 195.865 kb on + strand, within HMPREF1058_RS02410 at 195.866 kb on - strand, within HMPREF1058_RS02410 at 195.866 kb on - strand, within HMPREF1058_RS02410 at 195.957 kb on - strand, within HMPREF1058_RS02410 at 195.957 kb on - strand, within HMPREF1058_RS02410 at 195.985 kb on - strand, within HMPREF1058_RS02410 at 196.006 kb on + strand, within HMPREF1058_RS02410 at 196.007 kb on - strand, within HMPREF1058_RS02410 at 196.007 kb on - strand, within HMPREF1058_RS02410 at 196.007 kb on - strand, within HMPREF1058_RS02410 at 196.009 kb on - strand, within HMPREF1058_RS02410 at 196.099 kb on + strand, within HMPREF1058_RS02410 at 196.099 kb on + strand, within HMPREF1058_RS02410 at 196.101 kb on + strand, within HMPREF1058_RS02410 at 196.110 kb on - strand, within HMPREF1058_RS02410 at 196.146 kb on + strand, within HMPREF1058_RS02410 at 196.150 kb on + strand, within HMPREF1058_RS02410 at 196.153 kb on - strand, within HMPREF1058_RS02410 at 196.184 kb on - strand, within HMPREF1058_RS02410 at 196.247 kb on - strand, within HMPREF1058_RS02410 at 196.248 kb on + strand, within HMPREF1058_RS02410 at 196.248 kb on + strand, within HMPREF1058_RS02410 at 196.249 kb on - strand, within HMPREF1058_RS02410 at 196.269 kb on - strand, within HMPREF1058_RS02410 at 196.373 kb on + strand, within HMPREF1058_RS02410 at 196.373 kb on + strand, within HMPREF1058_RS02410 at 196.374 kb on - strand, within HMPREF1058_RS02410 at 196.374 kb on - strand, within HMPREF1058_RS02410 at 196.374 kb on - strand, within HMPREF1058_RS02410 at 196.374 kb on - strand, within HMPREF1058_RS02410 at 196.383 kb on - strand, within HMPREF1058_RS02410 at 196.486 kb on + strand, within HMPREF1058_RS02410 at 196.545 kb on + strand, within HMPREF1058_RS02410 at 196.546 kb on - strand, within HMPREF1058_RS02410 at 196.573 kb on - strand at 196.582 kb on + strand at 196.583 kb on - strand at 196.589 kb on + strand at 196.632 kb on + strand at 196.632 kb on + strand at 196.706 kb on - strand at 196.731 kb on + strand at 196.731 kb on + strand at 196.732 kb on - strand at 196.732 kb on - strand at 196.732 kb on - strand at 196.733 kb on + strand at 196.733 kb on + strand at 196.733 kb on + strand at 196.733 kb on + strand at 196.733 kb on + strand at 196.733 kb on + strand at 196.733 kb on + strand at 196.733 kb on + strand at 196.733 kb on + strand at 196.733 kb on + strand at 196.734 kb on - strand at 196.734 kb on - strand at 196.734 kb on - strand at 196.734 kb on - strand at 196.734 kb on - strand at 196.734 kb on - strand at 196.734 kb on - strand at 196.735 kb on + strand at 196.735 kb on + strand at 196.778 kb on - strand at 196.778 kb on - strand at 196.784 kb on + strand at 196.789 kb on + strand at 196.790 kb on - strand at 196.790 kb on - strand at 196.797 kb on + strand at 196.874 kb on - strand at 196.941 kb on + strand at 196.942 kb on - strand at 196.972 kb on + strand, within HMPREF1058_RS02405 at 196.977 kb on - strand, within HMPREF1058_RS02405 at 197.000 kb on - strand, within HMPREF1058_RS02405 at 197.022 kb on - strand, within HMPREF1058_RS02405 at 197.022 kb on - strand, within HMPREF1058_RS02405 at 197.271 kb on - strand, within HMPREF1058_RS02405 at 197.305 kb on + strand, within HMPREF1058_RS02405 at 197.306 kb on - strand, within HMPREF1058_RS02405 at 197.311 kb on - strand, within HMPREF1058_RS02405 at 197.438 kb on + strand, within HMPREF1058_RS02405 at 197.500 kb on - strand, within HMPREF1058_RS02405 at 197.522 kb on + strand, within HMPREF1058_RS02405 at 197.523 kb on - strand, within HMPREF1058_RS02405 at 197.556 kb on - strand, within HMPREF1058_RS02405 at 197.556 kb on - strand, within HMPREF1058_RS02405 at 197.604 kb on + strand, within HMPREF1058_RS02405 at 197.605 kb on - strand, within HMPREF1058_RS02405 at 197.605 kb on - strand, within HMPREF1058_RS02405 at 197.625 kb on - strand, within HMPREF1058_RS02405 at 197.690 kb on + strand, within HMPREF1058_RS02405 at 197.821 kb on - strand, within HMPREF1058_RS02405 at 197.848 kb on + strand, within HMPREF1058_RS02405 at 197.848 kb on + strand, within HMPREF1058_RS02405 at 197.848 kb on + strand, within HMPREF1058_RS02405 at 197.848 kb on + strand, within HMPREF1058_RS02405 at 197.849 kb on - strand, within HMPREF1058_RS02405 at 197.849 kb on - strand, within HMPREF1058_RS02405 at 197.884 kb on - strand, within HMPREF1058_RS02405 at 197.952 kb on - strand, within HMPREF1058_RS02405 at 198.010 kb on + strand, within HMPREF1058_RS02405 at 198.052 kb on + strand, within HMPREF1058_RS02405 at 198.053 kb on - strand, within HMPREF1058_RS02405 at 198.053 kb on - strand, within HMPREF1058_RS02405 at 198.081 kb on - strand, within HMPREF1058_RS02405 at 198.081 kb on - strand, within HMPREF1058_RS02405 at 198.104 kb on - strand, within HMPREF1058_RS02405 at 198.134 kb on + strand, within HMPREF1058_RS02405 at 198.152 kb on - strand, within HMPREF1058_RS02405 at 198.159 kb on + strand, within HMPREF1058_RS02405 at 198.159 kb on + strand, within HMPREF1058_RS02405 at 198.159 kb on + strand, within HMPREF1058_RS02405 at 198.211 kb on - strand, within HMPREF1058_RS02405 at 198.211 kb on - strand, within HMPREF1058_RS02405 at 198.231 kb on - strand, within HMPREF1058_RS02405 at 198.240 kb on + strand, within HMPREF1058_RS02405 at 198.289 kb on + strand, within HMPREF1058_RS02405 at 198.290 kb on - strand, within HMPREF1058_RS02405 at 198.343 kb on - strand, within HMPREF1058_RS02405 at 198.388 kb on + strand, within HMPREF1058_RS02405 at 198.413 kb on + strand, within HMPREF1058_RS02405 at 198.442 kb on + strand, within HMPREF1058_RS02405 at 198.468 kb on - strand, within HMPREF1058_RS02405 at 198.671 kb on - strand at 198.673 kb on + strand at 198.700 kb on + strand at 198.712 kb on - strand at 198.744 kb on + strand at 198.764 kb on - strand at 198.875 kb on + strand at 198.959 kb on + strand at 198.963 kb on - strand at 198.963 kb on - strand at 198.963 kb on - strand at 198.963 kb on - strand at 198.963 kb on - strand at 198.964 kb on + strand at 199.029 kb on - strand at 199.151 kb on - strand, within HMPREF1058_RS02400 at 199.158 kb on + strand, within HMPREF1058_RS02400 at 199.162 kb on + strand, within HMPREF1058_RS02400 at 199.189 kb on - strand, within HMPREF1058_RS02400 at 199.319 kb on + strand, within HMPREF1058_RS02400 at 199.352 kb on - strand, within HMPREF1058_RS02400 at 199.433 kb on + strand, within HMPREF1058_RS02400 at 199.513 kb on + strand, within HMPREF1058_RS02400 at 199.617 kb on + strand, within HMPREF1058_RS02400 at 199.621 kb on + strand at 199.622 kb on - strand, within HMPREF1058_RS02400 at 199.622 kb on - strand, within HMPREF1058_RS02400
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 195,865 + HMPREF1058_RS02410 0.58 -0.4 195,866 - HMPREF1058_RS02410 0.58 -2.8 195,866 - HMPREF1058_RS02410 0.58 -1.0 195,957 - HMPREF1058_RS02410 0.63 -1.7 195,957 - HMPREF1058_RS02410 0.63 -2.1 195,985 - HMPREF1058_RS02410 0.64 -0.9 196,006 + HMPREF1058_RS02410 0.65 -0.9 196,007 - HMPREF1058_RS02410 0.65 +1.1 196,007 - HMPREF1058_RS02410 0.65 -1.4 196,007 - HMPREF1058_RS02410 0.65 -0.8 196,009 - HMPREF1058_RS02410 0.65 +0.4 196,099 + HMPREF1058_RS02410 0.69 -0.8 196,099 + HMPREF1058_RS02410 0.69 -0.3 196,101 + HMPREF1058_RS02410 0.69 -2.3 196,110 - HMPREF1058_RS02410 0.70 -2.7 196,146 + HMPREF1058_RS02410 0.71 -0.6 196,150 + HMPREF1058_RS02410 0.72 -3.3 196,153 - HMPREF1058_RS02410 0.72 -2.0 196,184 - HMPREF1058_RS02410 0.73 -2.3 196,247 - HMPREF1058_RS02410 0.76 -0.9 196,248 + HMPREF1058_RS02410 0.76 -2.2 196,248 + HMPREF1058_RS02410 0.76 -0.4 196,249 - HMPREF1058_RS02410 0.76 -1.5 196,269 - HMPREF1058_RS02410 0.77 -2.2 196,373 + HMPREF1058_RS02410 0.82 -0.1 196,373 + HMPREF1058_RS02410 0.82 -1.3 196,374 - HMPREF1058_RS02410 0.82 -1.0 196,374 - HMPREF1058_RS02410 0.82 -0.4 196,374 - HMPREF1058_RS02410 0.82 -2.7 196,374 - HMPREF1058_RS02410 0.82 -1.7 196,383 - HMPREF1058_RS02410 0.82 -2.4 196,486 + HMPREF1058_RS02410 0.87 -3.1 196,545 + HMPREF1058_RS02410 0.90 +0.6 196,546 - HMPREF1058_RS02410 0.90 -0.2 196,573 - -0.2 196,582 + -0.3 196,583 - +0.1 196,589 + -2.7 196,632 + -0.6 196,632 + -2.1 196,706 - -1.6 196,731 + -2.8 196,731 + +2.0 196,732 - -1.9 196,732 - -0.5 196,732 - -1.8 196,733 + -1.4 196,733 + -0.5 196,733 + +1.0 196,733 + -2.3 196,733 + -2.3 196,733 + +1.0 196,733 + -1.1 196,733 + -2.5 196,733 + -0.6 196,733 + +2.6 196,734 - -3.0 196,734 - -1.1 196,734 - -1.0 196,734 - -2.6 196,734 - -2.5 196,734 - -1.4 196,734 - +0.2 196,735 + -1.5 196,735 + -0.4 196,778 - -1.1 196,778 - -0.5 196,784 + -1.1 196,789 + -1.6 196,790 - +0.2 196,790 - -0.8 196,797 + -3.0 196,874 - -2.6 196,941 + +2.6 196,942 - -1.2 196,972 + HMPREF1058_RS02405 0.10 -1.0 196,977 - HMPREF1058_RS02405 0.11 -1.9 197,000 - HMPREF1058_RS02405 0.12 -2.1 197,022 - HMPREF1058_RS02405 0.13 -1.3 197,022 - HMPREF1058_RS02405 0.13 -0.9 197,271 - HMPREF1058_RS02405 0.26 -1.8 197,305 + HMPREF1058_RS02405 0.28 -1.0 197,306 - HMPREF1058_RS02405 0.28 +0.7 197,311 - HMPREF1058_RS02405 0.28 -3.5 197,438 + HMPREF1058_RS02405 0.35 -0.1 197,500 - HMPREF1058_RS02405 0.38 -0.8 197,522 + HMPREF1058_RS02405 0.39 -2.7 197,523 - HMPREF1058_RS02405 0.39 -1.7 197,556 - HMPREF1058_RS02405 0.41 -1.8 197,556 - HMPREF1058_RS02405 0.41 -3.5 197,604 + HMPREF1058_RS02405 0.44 -1.0 197,605 - HMPREF1058_RS02405 0.44 -2.2 197,605 - HMPREF1058_RS02405 0.44 -3.2 197,625 - HMPREF1058_RS02405 0.45 -0.9 197,690 + HMPREF1058_RS02405 0.48 -1.4 197,821 - HMPREF1058_RS02405 0.55 -1.2 197,848 + HMPREF1058_RS02405 0.56 -0.6 197,848 + HMPREF1058_RS02405 0.56 -2.0 197,848 + HMPREF1058_RS02405 0.56 -1.4 197,848 + HMPREF1058_RS02405 0.56 -1.1 197,849 - HMPREF1058_RS02405 0.56 -1.4 197,849 - HMPREF1058_RS02405 0.56 +1.4 197,884 - HMPREF1058_RS02405 0.58 +0.0 197,952 - HMPREF1058_RS02405 0.62 -1.7 198,010 + HMPREF1058_RS02405 0.65 -0.9 198,052 + HMPREF1058_RS02405 0.67 -1.6 198,053 - HMPREF1058_RS02405 0.67 -2.0 198,053 - HMPREF1058_RS02405 0.67 -1.7 198,081 - HMPREF1058_RS02405 0.68 -2.5 198,081 - HMPREF1058_RS02405 0.68 -2.8 198,104 - HMPREF1058_RS02405 0.70 +1.0 198,134 + HMPREF1058_RS02405 0.71 -0.7 198,152 - HMPREF1058_RS02405 0.72 -0.6 198,159 + HMPREF1058_RS02405 0.73 -2.7 198,159 + HMPREF1058_RS02405 0.73 -2.3 198,159 + HMPREF1058_RS02405 0.73 -2.9 198,211 - HMPREF1058_RS02405 0.75 -0.8 198,211 - HMPREF1058_RS02405 0.75 -0.0 198,231 - HMPREF1058_RS02405 0.76 -3.3 198,240 + HMPREF1058_RS02405 0.77 -2.2 198,289 + HMPREF1058_RS02405 0.79 -1.5 198,290 - HMPREF1058_RS02405 0.79 -2.7 198,343 - HMPREF1058_RS02405 0.82 -2.2 198,388 + HMPREF1058_RS02405 0.85 -1.3 198,413 + HMPREF1058_RS02405 0.86 +0.6 198,442 + HMPREF1058_RS02405 0.87 -2.6 198,468 - HMPREF1058_RS02405 0.89 -1.8 198,671 - -2.6 198,673 + -1.3 198,700 + -0.1 198,712 - -0.0 198,744 + -0.8 198,764 - -1.3 198,875 + +1.4 198,959 + -1.9 198,963 - +1.6 198,963 - +0.4 198,963 - +1.0 198,963 - -0.2 198,963 - -0.5 198,964 + +0.1 199,029 - +1.0 199,151 - HMPREF1058_RS02400 0.11 +0.6 199,158 + HMPREF1058_RS02400 0.11 -0.7 199,162 + HMPREF1058_RS02400 0.12 +0.7 199,189 - HMPREF1058_RS02400 0.13 +0.2 199,319 + HMPREF1058_RS02400 0.21 +0.2 199,352 - HMPREF1058_RS02400 0.23 +0.2 199,433 + HMPREF1058_RS02400 0.28 -0.4 199,513 + HMPREF1058_RS02400 0.33 +0.3 199,617 + HMPREF1058_RS02400 0.39 -0.9 199,621 + +1.8 199,622 - HMPREF1058_RS02400 0.39 -1.0 199,622 - HMPREF1058_RS02400 0.39 -0.3
Or see this region's nucleotide sequence