Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02350 and HMPREF1058_RS02345 are separated by 48 nucleotides HMPREF1058_RS02345 and HMPREF1058_RS02340 are separated by 57 nucleotides HMPREF1058_RS02340 and HMPREF1058_RS21695 are separated by 229 nucleotides HMPREF1058_RS21695 and HMPREF1058_RS02335 are separated by 365 nucleotides
HMPREF1058_RS02350: HMPREF1058_RS02350 - dTDP-glucose 4,6-dehydratase, at 220,210 to 221,349
_RS02350
HMPREF1058_RS02345: HMPREF1058_RS02345 - metallophosphoesterase family protein, at 221,398 to 221,895
_RS02345
HMPREF1058_RS02340: HMPREF1058_RS02340 - RNA degradosome polyphosphate kinase, at 221,953 to 224,007
_RS02340
HMPREF1058_RS21695: HMPREF1058_RS21695 - hypothetical protein, at 224,237 to 224,392
_RS21695
HMPREF1058_RS02335: HMPREF1058_RS02335 - hypothetical protein, at 224,758 to 225,186
_RS02335
Position (kb) 221
222
223
224
225 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 221.423 kb on - strand at 221.428 kb on + strand at 221.464 kb on + strand, within HMPREF1058_RS02345 at 221.497 kb on - strand, within HMPREF1058_RS02345 at 221.521 kb on + strand, within HMPREF1058_RS02345 at 221.544 kb on - strand, within HMPREF1058_RS02345 at 221.558 kb on - strand, within HMPREF1058_RS02345 at 221.560 kb on - strand, within HMPREF1058_RS02345 at 221.560 kb on - strand, within HMPREF1058_RS02345 at 221.627 kb on + strand, within HMPREF1058_RS02345 at 221.648 kb on - strand, within HMPREF1058_RS02345 at 221.649 kb on + strand, within HMPREF1058_RS02345 at 221.650 kb on - strand, within HMPREF1058_RS02345 at 221.713 kb on + strand, within HMPREF1058_RS02345 at 221.740 kb on + strand, within HMPREF1058_RS02345 at 221.740 kb on + strand, within HMPREF1058_RS02345 at 221.835 kb on - strand, within HMPREF1058_RS02345 at 221.895 kb on + strand at 221.909 kb on - strand at 221.923 kb on + strand at 221.928 kb on + strand at 221.929 kb on - strand at 222.008 kb on - strand at 222.049 kb on + strand at 222.072 kb on + strand at 222.074 kb on + strand at 222.074 kb on + strand at 222.076 kb on + strand at 222.123 kb on + strand at 222.123 kb on + strand at 222.157 kb on - strand at 222.186 kb on - strand, within HMPREF1058_RS02340 at 222.239 kb on - strand, within HMPREF1058_RS02340 at 222.239 kb on - strand, within HMPREF1058_RS02340 at 222.246 kb on + strand, within HMPREF1058_RS02340 at 222.333 kb on + strand, within HMPREF1058_RS02340 at 222.472 kb on + strand, within HMPREF1058_RS02340 at 222.473 kb on - strand, within HMPREF1058_RS02340 at 222.473 kb on - strand, within HMPREF1058_RS02340 at 222.474 kb on + strand, within HMPREF1058_RS02340 at 222.474 kb on + strand, within HMPREF1058_RS02340 at 222.474 kb on + strand, within HMPREF1058_RS02340 at 222.474 kb on + strand, within HMPREF1058_RS02340 at 222.512 kb on + strand, within HMPREF1058_RS02340 at 222.542 kb on - strand, within HMPREF1058_RS02340 at 222.550 kb on + strand, within HMPREF1058_RS02340 at 222.550 kb on + strand, within HMPREF1058_RS02340 at 222.551 kb on - strand, within HMPREF1058_RS02340 at 222.551 kb on - strand, within HMPREF1058_RS02340 at 222.566 kb on + strand at 222.567 kb on - strand, within HMPREF1058_RS02340 at 222.616 kb on + strand, within HMPREF1058_RS02340 at 222.617 kb on - strand, within HMPREF1058_RS02340 at 222.729 kb on - strand, within HMPREF1058_RS02340 at 222.946 kb on + strand, within HMPREF1058_RS02340 at 223.015 kb on + strand, within HMPREF1058_RS02340 at 223.056 kb on + strand, within HMPREF1058_RS02340 at 223.065 kb on + strand, within HMPREF1058_RS02340 at 223.310 kb on - strand, within HMPREF1058_RS02340 at 223.310 kb on - strand, within HMPREF1058_RS02340 at 223.311 kb on + strand, within HMPREF1058_RS02340 at 223.386 kb on + strand, within HMPREF1058_RS02340 at 223.405 kb on - strand, within HMPREF1058_RS02340 at 223.405 kb on - strand, within HMPREF1058_RS02340 at 223.405 kb on - strand, within HMPREF1058_RS02340 at 223.514 kb on + strand, within HMPREF1058_RS02340 at 223.515 kb on - strand, within HMPREF1058_RS02340 at 223.597 kb on + strand, within HMPREF1058_RS02340 at 223.635 kb on - strand, within HMPREF1058_RS02340 at 223.675 kb on - strand, within HMPREF1058_RS02340 at 223.735 kb on + strand, within HMPREF1058_RS02340 at 223.860 kb on - strand at 223.863 kb on + strand at 223.863 kb on + strand at 223.863 kb on + strand at 223.864 kb on - strand at 223.881 kb on - strand at 223.970 kb on - strand at 223.970 kb on - strand at 224.024 kb on + strand at 224.111 kb on + strand at 224.217 kb on - strand at 224.217 kb on - strand at 224.260 kb on - strand, within HMPREF1058_RS21695 at 224.260 kb on - strand, within HMPREF1058_RS21695 at 224.287 kb on + strand, within HMPREF1058_RS21695 at 224.326 kb on - strand, within HMPREF1058_RS21695 at 224.513 kb on - strand at 224.772 kb on + strand at 224.962 kb on + strand, within HMPREF1058_RS02335 at 224.963 kb on - strand, within HMPREF1058_RS02335
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 221,423 - -0.0 221,428 + -0.3 221,464 + HMPREF1058_RS02345 0.13 -0.8 221,497 - HMPREF1058_RS02345 0.20 +1.5 221,521 + HMPREF1058_RS02345 0.25 -1.1 221,544 - HMPREF1058_RS02345 0.29 +0.6 221,558 - HMPREF1058_RS02345 0.32 -0.2 221,560 - HMPREF1058_RS02345 0.33 -0.2 221,560 - HMPREF1058_RS02345 0.33 +0.1 221,627 + HMPREF1058_RS02345 0.46 -0.1 221,648 - HMPREF1058_RS02345 0.50 -0.2 221,649 + HMPREF1058_RS02345 0.50 -0.4 221,650 - HMPREF1058_RS02345 0.51 -0.2 221,713 + HMPREF1058_RS02345 0.63 -0.4 221,740 + HMPREF1058_RS02345 0.69 -0.5 221,740 + HMPREF1058_RS02345 0.69 -2.1 221,835 - HMPREF1058_RS02345 0.88 +2.6 221,895 + -0.7 221,909 - -1.2 221,923 + -0.5 221,928 + +1.1 221,929 - -1.7 222,008 - -1.1 222,049 + -3.4 222,072 + -1.0 222,074 + -0.6 222,074 + -1.3 222,076 + -2.3 222,123 + -0.8 222,123 + -0.4 222,157 - -1.1 222,186 - HMPREF1058_RS02340 0.11 -1.4 222,239 - HMPREF1058_RS02340 0.14 -0.4 222,239 - HMPREF1058_RS02340 0.14 -0.0 222,246 + HMPREF1058_RS02340 0.14 -0.9 222,333 + HMPREF1058_RS02340 0.18 -1.5 222,472 + HMPREF1058_RS02340 0.25 +1.1 222,473 - HMPREF1058_RS02340 0.25 -1.4 222,473 - HMPREF1058_RS02340 0.25 -2.0 222,474 + HMPREF1058_RS02340 0.25 -0.0 222,474 + HMPREF1058_RS02340 0.25 -1.3 222,474 + HMPREF1058_RS02340 0.25 -1.8 222,474 + HMPREF1058_RS02340 0.25 -2.1 222,512 + HMPREF1058_RS02340 0.27 +0.0 222,542 - HMPREF1058_RS02340 0.29 -2.3 222,550 + HMPREF1058_RS02340 0.29 -0.5 222,550 + HMPREF1058_RS02340 0.29 -1.1 222,551 - HMPREF1058_RS02340 0.29 -2.9 222,551 - HMPREF1058_RS02340 0.29 -1.2 222,566 + -0.0 222,567 - HMPREF1058_RS02340 0.30 -1.2 222,616 + HMPREF1058_RS02340 0.32 +0.6 222,617 - HMPREF1058_RS02340 0.32 -0.9 222,729 - HMPREF1058_RS02340 0.38 -0.5 222,946 + HMPREF1058_RS02340 0.48 -1.2 223,015 + HMPREF1058_RS02340 0.52 -1.7 223,056 + HMPREF1058_RS02340 0.54 -0.7 223,065 + HMPREF1058_RS02340 0.54 -2.1 223,310 - HMPREF1058_RS02340 0.66 -1.3 223,310 - HMPREF1058_RS02340 0.66 -1.2 223,311 + HMPREF1058_RS02340 0.66 -3.9 223,386 + HMPREF1058_RS02340 0.70 -1.1 223,405 - HMPREF1058_RS02340 0.71 -2.4 223,405 - HMPREF1058_RS02340 0.71 -1.6 223,405 - HMPREF1058_RS02340 0.71 -3.5 223,514 + HMPREF1058_RS02340 0.76 -0.1 223,515 - HMPREF1058_RS02340 0.76 -1.9 223,597 + HMPREF1058_RS02340 0.80 -1.6 223,635 - HMPREF1058_RS02340 0.82 -1.2 223,675 - HMPREF1058_RS02340 0.84 -1.9 223,735 + HMPREF1058_RS02340 0.87 -1.0 223,860 - -0.5 223,863 + -3.2 223,863 + -1.2 223,863 + -2.3 223,864 - -1.8 223,881 - -0.8 223,970 - -2.3 223,970 - -0.4 224,024 + +1.6 224,111 + +0.2 224,217 - -0.2 224,217 - +0.0 224,260 - HMPREF1058_RS21695 0.15 +2.6 224,260 - HMPREF1058_RS21695 0.15 -0.1 224,287 + HMPREF1058_RS21695 0.32 -0.0 224,326 - HMPREF1058_RS21695 0.57 -2.3 224,513 - +0.3 224,772 + -0.3 224,962 + HMPREF1058_RS02335 0.48 -0.9 224,963 - HMPREF1058_RS02335 0.48 -0.1
Or see this region's nucleotide sequence