Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02170

Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS02175 and HMPREF1058_RS02170 are separated by 214 nucleotidesHMPREF1058_RS02170 and HMPREF1058_RS02165 are separated by 156 nucleotides HMPREF1058_RS02175: HMPREF1058_RS02175 - TolC family protein, at 264,443 to 265,906 _RS02175 HMPREF1058_RS02170: HMPREF1058_RS02170 - hypothetical protein, at 266,121 to 266,993 _RS02170 HMPREF1058_RS02165: HMPREF1058_RS02165 - malate dehydrogenase, at 267,150 to 268,091 _RS02165 Position (kb) 266 267Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 265.125 kb on - strand, within HMPREF1058_RS02175at 265.136 kb on + strand, within HMPREF1058_RS02175at 265.137 kb on - strand, within HMPREF1058_RS02175at 265.172 kb on + strand, within HMPREF1058_RS02175at 265.185 kb on - strand, within HMPREF1058_RS02175at 265.384 kb on - strand, within HMPREF1058_RS02175at 265.397 kb on - strand, within HMPREF1058_RS02175at 265.401 kb on + strand, within HMPREF1058_RS02175at 265.458 kb on + strand, within HMPREF1058_RS02175at 265.458 kb on + strand, within HMPREF1058_RS02175at 265.458 kb on + strand, within HMPREF1058_RS02175at 265.458 kb on + strand, within HMPREF1058_RS02175at 265.459 kb on - strand, within HMPREF1058_RS02175at 265.463 kb on - strand, within HMPREF1058_RS02175at 265.560 kb on - strand, within HMPREF1058_RS02175at 265.628 kb on - strand, within HMPREF1058_RS02175at 265.634 kb on + strand, within HMPREF1058_RS02175at 265.698 kb on + strand, within HMPREF1058_RS02175at 265.698 kb on + strand, within HMPREF1058_RS02175at 265.699 kb on - strand, within HMPREF1058_RS02175at 265.707 kb on - strand, within HMPREF1058_RS02175at 265.729 kb on - strand, within HMPREF1058_RS02175at 265.828 kb on + strandat 265.832 kb on + strandat 265.832 kb on + strandat 265.833 kb on - strandat 265.833 kb on - strandat 265.861 kb on + strandat 265.865 kb on + strandat 265.866 kb on - strandat 265.877 kb on - strandat 266.023 kb on + strandat 266.024 kb on - strandat 266.030 kb on - strandat 266.122 kb on + strandat 266.183 kb on - strandat 266.200 kb on + strandat 266.282 kb on + strand, within HMPREF1058_RS02170at 266.325 kb on + strand, within HMPREF1058_RS02170at 266.348 kb on + strand, within HMPREF1058_RS02170at 266.353 kb on - strand, within HMPREF1058_RS02170at 266.353 kb on - strand, within HMPREF1058_RS02170at 266.353 kb on - strand, within HMPREF1058_RS02170at 266.353 kb on - strandat 266.356 kb on + strand, within HMPREF1058_RS02170at 266.356 kb on + strand, within HMPREF1058_RS02170at 266.357 kb on - strand, within HMPREF1058_RS02170at 266.357 kb on - strand, within HMPREF1058_RS02170at 266.450 kb on + strand, within HMPREF1058_RS02170at 266.478 kb on - strand, within HMPREF1058_RS02170at 266.576 kb on - strand, within HMPREF1058_RS02170at 266.638 kb on - strand, within HMPREF1058_RS02170at 266.650 kb on + strand, within HMPREF1058_RS02170at 266.651 kb on - strand, within HMPREF1058_RS02170at 266.651 kb on - strand, within HMPREF1058_RS02170at 266.651 kb on - strand, within HMPREF1058_RS02170at 266.670 kb on + strand, within HMPREF1058_RS02170at 266.671 kb on - strand, within HMPREF1058_RS02170at 266.733 kb on + strand, within HMPREF1058_RS02170at 266.843 kb on + strand, within HMPREF1058_RS02170at 266.846 kb on - strand, within HMPREF1058_RS02170at 267.021 kb on + strandat 267.027 kb on - strandat 267.036 kb on - strandat 267.105 kb on + strandat 267.150 kb on - strandat 267.150 kb on - strandat 267.166 kb on + strandat 267.184 kb on + strandat 267.184 kb on + strandat 267.184 kb on + strandat 267.184 kb on + strandat 267.235 kb on + strandat 267.236 kb on - strandat 267.238 kb on + strandat 267.284 kb on + strand, within HMPREF1058_RS02165at 267.329 kb on - strand, within HMPREF1058_RS02165at 267.435 kb on - strand, within HMPREF1058_RS02165at 267.467 kb on + strand, within HMPREF1058_RS02165at 267.472 kb on + strand, within HMPREF1058_RS02165at 267.492 kb on - strand, within HMPREF1058_RS02165at 267.499 kb on + strand, within HMPREF1058_RS02165at 267.500 kb on - strand, within HMPREF1058_RS02165at 267.500 kb on - strand, within HMPREF1058_RS02165at 267.524 kb on + strand, within HMPREF1058_RS02165at 267.524 kb on + strand, within HMPREF1058_RS02165at 267.524 kb on + strand, within HMPREF1058_RS02165at 267.525 kb on - strand, within HMPREF1058_RS02165at 267.531 kb on + strand, within HMPREF1058_RS02165at 267.531 kb on + strand, within HMPREF1058_RS02165at 267.532 kb on - strand, within HMPREF1058_RS02165at 267.566 kb on + strand, within HMPREF1058_RS02165at 267.683 kb on + strand, within HMPREF1058_RS02165at 267.684 kb on - strand, within HMPREF1058_RS02165at 267.686 kb on + strand, within HMPREF1058_RS02165at 267.686 kb on + strand, within HMPREF1058_RS02165at 267.687 kb on - strand, within HMPREF1058_RS02165at 267.690 kb on - strand, within HMPREF1058_RS02165at 267.718 kb on - strand, within HMPREF1058_RS02165at 267.718 kb on - strand, within HMPREF1058_RS02165at 267.779 kb on + strand, within HMPREF1058_RS02165at 267.831 kb on + strand, within HMPREF1058_RS02165at 267.925 kb on - strand, within HMPREF1058_RS02165at 267.939 kb on - strand, within HMPREF1058_RS02165

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
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265,125 - HMPREF1058_RS02175 0.47 -0.6
265,136 + HMPREF1058_RS02175 0.47 +0.1
265,137 - HMPREF1058_RS02175 0.47 -0.3
265,172 + HMPREF1058_RS02175 0.50 -0.1
265,185 - HMPREF1058_RS02175 0.51 +1.1
265,384 - HMPREF1058_RS02175 0.64 +0.2
265,397 - HMPREF1058_RS02175 0.65 +0.2
265,401 + HMPREF1058_RS02175 0.65 +1.2
265,458 + HMPREF1058_RS02175 0.69 -0.1
265,458 + HMPREF1058_RS02175 0.69 -1.7
265,458 + HMPREF1058_RS02175 0.69 +0.4
265,458 + HMPREF1058_RS02175 0.69 -0.4
265,459 - HMPREF1058_RS02175 0.69 -0.3
265,463 - HMPREF1058_RS02175 0.70 -0.8
265,560 - HMPREF1058_RS02175 0.76 +0.1
265,628 - HMPREF1058_RS02175 0.81 -0.1
265,634 + HMPREF1058_RS02175 0.81 -0.8
265,698 + HMPREF1058_RS02175 0.86 +0.2
265,698 + HMPREF1058_RS02175 0.86 +0.2
265,699 - HMPREF1058_RS02175 0.86 -2.3
265,707 - HMPREF1058_RS02175 0.86 -0.1
265,729 - HMPREF1058_RS02175 0.88 +0.7
265,828 + -1.0
265,832 + -0.0
265,832 + +0.6
265,833 - -0.4
265,833 - +0.8
265,861 + -1.1
265,865 + -0.4
265,866 - +2.0
265,877 - +0.1
266,023 + -0.6
266,024 - +1.8
266,030 - -0.2
266,122 + +0.0
266,183 - -2.5
266,200 + -2.5
266,282 + HMPREF1058_RS02170 0.18 -2.8
266,325 + HMPREF1058_RS02170 0.23 -1.0
266,348 + HMPREF1058_RS02170 0.26 -2.4
266,353 - HMPREF1058_RS02170 0.27 -3.1
266,353 - HMPREF1058_RS02170 0.27 -1.5
266,353 - HMPREF1058_RS02170 0.27 -2.7
266,353 - -0.4
266,356 + HMPREF1058_RS02170 0.27 -0.0
266,356 + HMPREF1058_RS02170 0.27 -0.0
266,357 - HMPREF1058_RS02170 0.27 -0.2
266,357 - HMPREF1058_RS02170 0.27 -2.1
266,450 + HMPREF1058_RS02170 0.38 +0.2
266,478 - HMPREF1058_RS02170 0.41 -0.2
266,576 - HMPREF1058_RS02170 0.52 -1.2
266,638 - HMPREF1058_RS02170 0.59 -2.5
266,650 + HMPREF1058_RS02170 0.61 -1.1
266,651 - HMPREF1058_RS02170 0.61 -1.2
266,651 - HMPREF1058_RS02170 0.61 -0.8
266,651 - HMPREF1058_RS02170 0.61 -2.8
266,670 + HMPREF1058_RS02170 0.63 -0.4
266,671 - HMPREF1058_RS02170 0.63 +1.1
266,733 + HMPREF1058_RS02170 0.70 +1.2
266,843 + HMPREF1058_RS02170 0.83 -1.8
266,846 - HMPREF1058_RS02170 0.83 -0.0
267,021 + -0.4
267,027 - +0.8
267,036 - +2.9
267,105 + +1.0
267,150 - +0.2
267,150 - -1.0
267,166 + -0.2
267,184 + -0.3
267,184 + -0.4
267,184 + -0.7
267,184 + +0.1
267,235 + -1.0
267,236 - -0.7
267,238 + -0.7
267,284 + HMPREF1058_RS02165 0.14 -2.9
267,329 - HMPREF1058_RS02165 0.19 -0.7
267,435 - HMPREF1058_RS02165 0.30 +0.6
267,467 + HMPREF1058_RS02165 0.34 -0.1
267,472 + HMPREF1058_RS02165 0.34 -0.2
267,492 - HMPREF1058_RS02165 0.36 +0.7
267,499 + HMPREF1058_RS02165 0.37 -1.8
267,500 - HMPREF1058_RS02165 0.37 +0.3
267,500 - HMPREF1058_RS02165 0.37 -1.2
267,524 + HMPREF1058_RS02165 0.40 +0.1
267,524 + HMPREF1058_RS02165 0.40 -0.4
267,524 + HMPREF1058_RS02165 0.40 -0.6
267,525 - HMPREF1058_RS02165 0.40 -0.4
267,531 + HMPREF1058_RS02165 0.40 -0.8
267,531 + HMPREF1058_RS02165 0.40 -1.3
267,532 - HMPREF1058_RS02165 0.41 -0.7
267,566 + HMPREF1058_RS02165 0.44 -2.3
267,683 + HMPREF1058_RS02165 0.57 +0.6
267,684 - HMPREF1058_RS02165 0.57 -1.0
267,686 + HMPREF1058_RS02165 0.57 +0.5
267,686 + HMPREF1058_RS02165 0.57 -1.0
267,687 - HMPREF1058_RS02165 0.57 -0.7
267,690 - HMPREF1058_RS02165 0.57 +1.0
267,718 - HMPREF1058_RS02165 0.60 -0.3
267,718 - HMPREF1058_RS02165 0.60 -1.4
267,779 + HMPREF1058_RS02165 0.67 +0.2
267,831 + HMPREF1058_RS02165 0.72 +0.7
267,925 - HMPREF1058_RS02165 0.82 +3.6
267,939 - HMPREF1058_RS02165 0.84 -1.6

Or see this region's nucleotide sequence