Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02115 and HMPREF1058_RS02110 are separated by 466 nucleotides HMPREF1058_RS02110 and HMPREF1058_RS02105 are separated by 451 nucleotides
HMPREF1058_RS02115: HMPREF1058_RS02115 - NADP-specific glutamate dehydrogenase, at 282,013 to 283,347
_RS02115
HMPREF1058_RS02110: HMPREF1058_RS02110 - NADP-dependent malic enzyme, at 283,814 to 286,099
_RS02110
HMPREF1058_RS02105: HMPREF1058_RS02105 - efflux RND transporter periplasmic adaptor subunit, at 286,551 to 287,762
_RS02105
Position (kb) 283
284
285
286
287 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 282.832 kb on + strand, within HMPREF1058_RS02115 at 282.848 kb on - strand, within HMPREF1058_RS02115 at 282.868 kb on + strand, within HMPREF1058_RS02115 at 282.869 kb on - strand, within HMPREF1058_RS02115 at 283.000 kb on - strand, within HMPREF1058_RS02115 at 283.057 kb on + strand, within HMPREF1058_RS02115 at 283.108 kb on - strand, within HMPREF1058_RS02115 at 283.108 kb on - strand, within HMPREF1058_RS02115 at 283.336 kb on - strand at 283.352 kb on + strand at 283.363 kb on - strand at 283.376 kb on - strand at 283.378 kb on + strand at 283.533 kb on + strand at 283.619 kb on - strand at 283.685 kb on + strand at 283.686 kb on - strand at 283.688 kb on + strand at 283.736 kb on - strand at 283.743 kb on + strand at 283.773 kb on - strand at 283.784 kb on + strand at 283.784 kb on + strand at 283.790 kb on + strand at 283.812 kb on - strand at 283.875 kb on - strand at 283.967 kb on - strand at 284.015 kb on + strand at 284.028 kb on - strand at 284.114 kb on + strand, within HMPREF1058_RS02110 at 284.115 kb on - strand, within HMPREF1058_RS02110 at 284.143 kb on + strand, within HMPREF1058_RS02110 at 284.143 kb on + strand, within HMPREF1058_RS02110 at 284.144 kb on - strand, within HMPREF1058_RS02110 at 284.163 kb on - strand, within HMPREF1058_RS02110 at 284.168 kb on - strand, within HMPREF1058_RS02110 at 284.185 kb on + strand, within HMPREF1058_RS02110 at 284.328 kb on + strand, within HMPREF1058_RS02110 at 284.328 kb on + strand, within HMPREF1058_RS02110 at 284.328 kb on + strand, within HMPREF1058_RS02110 at 284.428 kb on - strand, within HMPREF1058_RS02110 at 284.435 kb on - strand, within HMPREF1058_RS02110 at 284.438 kb on + strand, within HMPREF1058_RS02110 at 284.438 kb on + strand, within HMPREF1058_RS02110 at 284.439 kb on - strand, within HMPREF1058_RS02110 at 284.684 kb on + strand, within HMPREF1058_RS02110 at 284.687 kb on + strand, within HMPREF1058_RS02110 at 284.687 kb on + strand, within HMPREF1058_RS02110 at 284.766 kb on - strand, within HMPREF1058_RS02110 at 284.857 kb on - strand, within HMPREF1058_RS02110 at 285.103 kb on + strand, within HMPREF1058_RS02110 at 285.125 kb on - strand, within HMPREF1058_RS02110 at 285.140 kb on + strand, within HMPREF1058_RS02110 at 285.145 kb on + strand, within HMPREF1058_RS02110 at 285.188 kb on + strand, within HMPREF1058_RS02110 at 285.189 kb on - strand, within HMPREF1058_RS02110 at 285.358 kb on + strand, within HMPREF1058_RS02110 at 285.359 kb on - strand, within HMPREF1058_RS02110 at 285.359 kb on - strand, within HMPREF1058_RS02110 at 285.359 kb on - strand, within HMPREF1058_RS02110 at 285.363 kb on - strand, within HMPREF1058_RS02110 at 285.444 kb on - strand, within HMPREF1058_RS02110 at 285.473 kb on + strand, within HMPREF1058_RS02110 at 285.480 kb on - strand, within HMPREF1058_RS02110 at 285.813 kb on - strand, within HMPREF1058_RS02110 at 285.855 kb on - strand, within HMPREF1058_RS02110 at 285.855 kb on - strand, within HMPREF1058_RS02110 at 285.893 kb on - strand at 285.902 kb on + strand at 285.919 kb on + strand at 285.920 kb on - strand at 285.922 kb on - strand at 286.112 kb on + strand at 286.114 kb on + strand at 286.122 kb on + strand at 286.309 kb on + strand at 286.359 kb on + strand at 286.395 kb on - strand at 286.502 kb on - strand at 286.527 kb on - strand at 286.547 kb on - strand at 286.568 kb on + strand at 286.571 kb on + strand at 286.726 kb on - strand, within HMPREF1058_RS02105 at 286.894 kb on + strand, within HMPREF1058_RS02105 at 286.895 kb on - strand, within HMPREF1058_RS02105 at 286.956 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 282,832 + HMPREF1058_RS02115 0.61 -0.7 282,848 - HMPREF1058_RS02115 0.63 -0.8 282,868 + HMPREF1058_RS02115 0.64 -1.1 282,869 - HMPREF1058_RS02115 0.64 +0.1 283,000 - HMPREF1058_RS02115 0.74 -1.9 283,057 + HMPREF1058_RS02115 0.78 -1.9 283,108 - HMPREF1058_RS02115 0.82 -0.8 283,108 - HMPREF1058_RS02115 0.82 -0.6 283,336 - -1.2 283,352 + -2.6 283,363 - +1.3 283,376 - +0.6 283,378 + -0.1 283,533 + +0.1 283,619 - -0.0 283,685 + +0.3 283,686 - +0.6 283,688 + -1.1 283,736 - -1.4 283,743 + -1.3 283,773 - +0.5 283,784 + -0.6 283,784 + -0.2 283,790 + -1.3 283,812 - +1.0 283,875 - -0.4 283,967 - -0.9 284,015 + -1.4 284,028 - -2.2 284,114 + HMPREF1058_RS02110 0.13 -1.1 284,115 - HMPREF1058_RS02110 0.13 -1.7 284,143 + HMPREF1058_RS02110 0.14 -2.2 284,143 + HMPREF1058_RS02110 0.14 -0.4 284,144 - HMPREF1058_RS02110 0.14 +0.1 284,163 - HMPREF1058_RS02110 0.15 +0.2 284,168 - HMPREF1058_RS02110 0.15 +1.6 284,185 + HMPREF1058_RS02110 0.16 -0.6 284,328 + HMPREF1058_RS02110 0.22 -1.4 284,328 + HMPREF1058_RS02110 0.22 -1.6 284,328 + HMPREF1058_RS02110 0.22 -3.5 284,428 - HMPREF1058_RS02110 0.27 -1.5 284,435 - HMPREF1058_RS02110 0.27 -2.2 284,438 + HMPREF1058_RS02110 0.27 -1.2 284,438 + HMPREF1058_RS02110 0.27 -0.2 284,439 - HMPREF1058_RS02110 0.27 -1.1 284,684 + HMPREF1058_RS02110 0.38 -0.3 284,687 + HMPREF1058_RS02110 0.38 +0.1 284,687 + HMPREF1058_RS02110 0.38 -1.0 284,766 - HMPREF1058_RS02110 0.42 -1.7 284,857 - HMPREF1058_RS02110 0.46 +1.0 285,103 + HMPREF1058_RS02110 0.56 -0.7 285,125 - HMPREF1058_RS02110 0.57 -1.7 285,140 + HMPREF1058_RS02110 0.58 -1.1 285,145 + HMPREF1058_RS02110 0.58 -0.3 285,188 + HMPREF1058_RS02110 0.60 -1.5 285,189 - HMPREF1058_RS02110 0.60 -1.3 285,358 + HMPREF1058_RS02110 0.68 -1.9 285,359 - HMPREF1058_RS02110 0.68 -1.5 285,359 - HMPREF1058_RS02110 0.68 -1.4 285,359 - HMPREF1058_RS02110 0.68 -1.4 285,363 - HMPREF1058_RS02110 0.68 -0.2 285,444 - HMPREF1058_RS02110 0.71 -1.3 285,473 + HMPREF1058_RS02110 0.73 -1.1 285,480 - HMPREF1058_RS02110 0.73 -2.6 285,813 - HMPREF1058_RS02110 0.87 +1.1 285,855 - HMPREF1058_RS02110 0.89 -2.2 285,855 - HMPREF1058_RS02110 0.89 -2.6 285,893 - -1.4 285,902 + -0.9 285,919 + -3.1 285,920 - -0.8 285,922 - -1.0 286,112 + -0.8 286,114 + -0.4 286,122 + +1.0 286,309 + +1.9 286,359 + +2.6 286,395 - +0.1 286,502 - -0.9 286,527 - -1.7 286,547 - -1.3 286,568 + +1.2 286,571 + -0.3 286,726 - HMPREF1058_RS02105 0.14 -0.2 286,894 + HMPREF1058_RS02105 0.28 +2.0 286,895 - HMPREF1058_RS02105 0.28 -1.8 286,956 + +0.6
Or see this region's nucleotide sequence