Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02070 and HMPREF1058_RS02065 are separated by 72 nucleotides HMPREF1058_RS02065 and HMPREF1058_RS02060 are separated by 136 nucleotides
HMPREF1058_RS02070: HMPREF1058_RS02070 - efflux RND transporter permease subunit, at 296,395 to 299,565
_RS02070
HMPREF1058_RS02065: HMPREF1058_RS02065 - hypothetical protein, at 299,638 to 299,931
_RS02065
HMPREF1058_RS02060: HMPREF1058_RS02060 - SGNH/GDSL hydrolase family protein, at 300,068 to 301,435
_RS02060
Position (kb) 299
300 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 298.675 kb on + strand, within HMPREF1058_RS02070 at 298.676 kb on - strand, within HMPREF1058_RS02070 at 298.676 kb on - strand, within HMPREF1058_RS02070 at 298.680 kb on + strand, within HMPREF1058_RS02070 at 298.759 kb on - strand, within HMPREF1058_RS02070 at 298.812 kb on + strand, within HMPREF1058_RS02070 at 298.825 kb on - strand, within HMPREF1058_RS02070 at 298.839 kb on + strand, within HMPREF1058_RS02070 at 298.840 kb on - strand, within HMPREF1058_RS02070 at 298.840 kb on - strand, within HMPREF1058_RS02070 at 298.851 kb on - strand, within HMPREF1058_RS02070 at 298.881 kb on + strand, within HMPREF1058_RS02070 at 298.906 kb on - strand, within HMPREF1058_RS02070 at 298.961 kb on - strand, within HMPREF1058_RS02070 at 299.017 kb on - strand, within HMPREF1058_RS02070 at 299.017 kb on - strand, within HMPREF1058_RS02070 at 299.018 kb on + strand, within HMPREF1058_RS02070 at 299.019 kb on - strand, within HMPREF1058_RS02070 at 299.019 kb on - strand, within HMPREF1058_RS02070 at 299.025 kb on - strand, within HMPREF1058_RS02070 at 299.076 kb on + strand, within HMPREF1058_RS02070 at 299.122 kb on + strand, within HMPREF1058_RS02070 at 299.137 kb on - strand, within HMPREF1058_RS02070 at 299.166 kb on + strand, within HMPREF1058_RS02070 at 299.215 kb on + strand, within HMPREF1058_RS02070 at 299.216 kb on - strand, within HMPREF1058_RS02070 at 299.220 kb on + strand, within HMPREF1058_RS02070 at 299.220 kb on + strand, within HMPREF1058_RS02070 at 299.220 kb on + strand, within HMPREF1058_RS02070 at 299.221 kb on - strand, within HMPREF1058_RS02070 at 299.221 kb on - strand, within HMPREF1058_RS02070 at 299.225 kb on + strand, within HMPREF1058_RS02070 at 299.412 kb on + strand at 299.518 kb on + strand at 299.532 kb on + strand at 299.571 kb on - strand at 299.572 kb on + strand at 299.573 kb on - strand at 299.619 kb on + strand at 299.683 kb on - strand, within HMPREF1058_RS02065 at 299.683 kb on - strand, within HMPREF1058_RS02065 at 300.006 kb on + strand at 300.007 kb on - strand at 300.016 kb on + strand at 300.017 kb on - strand at 300.017 kb on - strand at 300.059 kb on + strand at 300.062 kb on - strand at 300.077 kb on + strand at 300.077 kb on + strand at 300.078 kb on - strand at 300.079 kb on + strand at 300.081 kb on + strand at 300.111 kb on + strand at 300.114 kb on + strand at 300.222 kb on + strand, within HMPREF1058_RS02060 at 300.223 kb on - strand, within HMPREF1058_RS02060 at 300.278 kb on - strand, within HMPREF1058_RS02060 at 300.283 kb on + strand, within HMPREF1058_RS02060 at 300.284 kb on - strand, within HMPREF1058_RS02060 at 300.399 kb on - strand, within HMPREF1058_RS02060 at 300.399 kb on - strand, within HMPREF1058_RS02060 at 300.642 kb on - strand, within HMPREF1058_RS02060 at 300.642 kb on - strand, within HMPREF1058_RS02060 at 300.642 kb on - strand, within HMPREF1058_RS02060 at 300.664 kb on + strand, within HMPREF1058_RS02060 at 300.665 kb on - strand, within HMPREF1058_RS02060 at 300.771 kb on + strand, within HMPREF1058_RS02060 at 300.825 kb on + strand, within HMPREF1058_RS02060 at 300.834 kb on + strand, within HMPREF1058_RS02060 at 300.835 kb on - strand, within HMPREF1058_RS02060 at 300.866 kb on - strand, within HMPREF1058_RS02060 at 300.873 kb on - strand, within HMPREF1058_RS02060
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 298,675 + HMPREF1058_RS02070 0.72 -0.0 298,676 - HMPREF1058_RS02070 0.72 -1.4 298,676 - HMPREF1058_RS02070 0.72 +0.1 298,680 + HMPREF1058_RS02070 0.72 +1.6 298,759 - HMPREF1058_RS02070 0.75 +0.2 298,812 + HMPREF1058_RS02070 0.76 -0.4 298,825 - HMPREF1058_RS02070 0.77 -1.3 298,839 + HMPREF1058_RS02070 0.77 +0.1 298,840 - HMPREF1058_RS02070 0.77 -0.9 298,840 - HMPREF1058_RS02070 0.77 -1.0 298,851 - HMPREF1058_RS02070 0.77 +0.3 298,881 + HMPREF1058_RS02070 0.78 +2.3 298,906 - HMPREF1058_RS02070 0.79 +1.4 298,961 - HMPREF1058_RS02070 0.81 -1.1 299,017 - HMPREF1058_RS02070 0.83 -2.2 299,017 - HMPREF1058_RS02070 0.83 -1.5 299,018 + HMPREF1058_RS02070 0.83 -0.1 299,019 - HMPREF1058_RS02070 0.83 -0.3 299,019 - HMPREF1058_RS02070 0.83 -0.4 299,025 - HMPREF1058_RS02070 0.83 -1.7 299,076 + HMPREF1058_RS02070 0.85 -0.4 299,122 + HMPREF1058_RS02070 0.86 -1.5 299,137 - HMPREF1058_RS02070 0.86 -1.4 299,166 + HMPREF1058_RS02070 0.87 -0.2 299,215 + HMPREF1058_RS02070 0.89 -0.3 299,216 - HMPREF1058_RS02070 0.89 +0.7 299,220 + HMPREF1058_RS02070 0.89 +1.0 299,220 + HMPREF1058_RS02070 0.89 -0.9 299,220 + HMPREF1058_RS02070 0.89 -0.0 299,221 - HMPREF1058_RS02070 0.89 -0.7 299,221 - HMPREF1058_RS02070 0.89 -3.7 299,225 + HMPREF1058_RS02070 0.89 -0.0 299,412 + +1.0 299,518 + -1.0 299,532 + -0.3 299,571 - +1.0 299,572 + +0.5 299,573 - +1.6 299,619 + -0.2 299,683 - HMPREF1058_RS02065 0.15 -2.0 299,683 - HMPREF1058_RS02065 0.15 -1.1 300,006 + +0.6 300,007 - +0.7 300,016 + +0.8 300,017 - -0.0 300,017 - -0.2 300,059 + +0.4 300,062 - -0.4 300,077 + +0.8 300,077 + -0.8 300,078 - -0.7 300,079 + +0.2 300,081 + -1.0 300,111 + -0.6 300,114 + -1.0 300,222 + HMPREF1058_RS02060 0.11 -2.7 300,223 - HMPREF1058_RS02060 0.11 +1.0 300,278 - HMPREF1058_RS02060 0.15 -0.7 300,283 + HMPREF1058_RS02060 0.16 -0.5 300,284 - HMPREF1058_RS02060 0.16 -0.4 300,399 - HMPREF1058_RS02060 0.24 -0.6 300,399 - HMPREF1058_RS02060 0.24 -2.2 300,642 - HMPREF1058_RS02060 0.42 -1.1 300,642 - HMPREF1058_RS02060 0.42 -0.4 300,642 - HMPREF1058_RS02060 0.42 -2.0 300,664 + HMPREF1058_RS02060 0.44 +0.3 300,665 - HMPREF1058_RS02060 0.44 +1.4 300,771 + HMPREF1058_RS02060 0.51 +1.0 300,825 + HMPREF1058_RS02060 0.55 -0.2 300,834 + HMPREF1058_RS02060 0.56 -0.0 300,835 - HMPREF1058_RS02060 0.56 -2.3 300,866 - HMPREF1058_RS02060 0.58 -0.6 300,873 - HMPREF1058_RS02060 0.59 -2.9
Or see this region's nucleotide sequence