Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01670 and HMPREF1058_RS01665 are separated by 23 nucleotides HMPREF1058_RS01665 and HMPREF1058_RS01660 are separated by 109 nucleotides HMPREF1058_RS01660 and HMPREF1058_RS01655 are separated by 3 nucleotides
HMPREF1058_RS01670: HMPREF1058_RS01670 - isoleucine--tRNA ligase, at 70,484 to 73,972
_RS01670
HMPREF1058_RS01665: HMPREF1058_RS01665 - TraR/DksA C4-type zinc finger protein, at 73,996 to 74,376
_RS01665
HMPREF1058_RS01660: HMPREF1058_RS01660 - lipoprotein signal peptidase, at 74,486 to 75,124
_RS01660
HMPREF1058_RS01655: HMPREF1058_RS01655 - DUF4296 domain-containing protein, at 75,128 to 76,102
_RS01655
Position (kb) 73
74
75 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 73.974 kb on + strand at 73.974 kb on + strand at 73.974 kb on + strand at 73.982 kb on + strand at 73.988 kb on + strand at 73.993 kb on + strand at 73.993 kb on + strand at 73.995 kb on + strand at 73.995 kb on + strand at 74.014 kb on + strand at 74.103 kb on + strand, within HMPREF1058_RS01665 at 74.145 kb on + strand, within HMPREF1058_RS01665 at 74.175 kb on + strand, within HMPREF1058_RS01665 at 74.252 kb on + strand, within HMPREF1058_RS01665 at 74.277 kb on + strand, within HMPREF1058_RS01665 at 74.277 kb on + strand, within HMPREF1058_RS01665 at 74.403 kb on + strand at 74.403 kb on + strand at 74.433 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 73,974 + -3.2 73,974 + +0.5 73,974 + -0.9 73,982 + -1.6 73,988 + -1.5 73,993 + -3.3 73,993 + -3.5 73,995 + -0.7 73,995 + -2.4 74,014 + -2.0 74,103 + HMPREF1058_RS01665 0.28 +2.4 74,145 + HMPREF1058_RS01665 0.39 -2.6 74,175 + HMPREF1058_RS01665 0.47 -3.6 74,252 + HMPREF1058_RS01665 0.67 -2.1 74,277 + HMPREF1058_RS01665 0.74 -2.2 74,277 + HMPREF1058_RS01665 0.74 -0.6 74,403 + -1.7 74,403 + -0.9 74,433 + +0.2
Or see this region's nucleotide sequence