Experiment: Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01665 and HMPREF1058_RS01660 are separated by 109 nucleotides HMPREF1058_RS01660 and HMPREF1058_RS01655 are separated by 3 nucleotides HMPREF1058_RS01655 and HMPREF1058_RS01650 are separated by 15 nucleotides HMPREF1058_RS01650 and HMPREF1058_RS01645 are separated by 71 nucleotides
HMPREF1058_RS01665: HMPREF1058_RS01665 - TraR/DksA C4-type zinc finger protein, at 73,996 to 74,376
_RS01665
HMPREF1058_RS01660: HMPREF1058_RS01660 - lipoprotein signal peptidase, at 74,486 to 75,124
_RS01660
HMPREF1058_RS01655: HMPREF1058_RS01655 - DUF4296 domain-containing protein, at 75,128 to 76,102
_RS01655
HMPREF1058_RS01650: HMPREF1058_RS01650 - hypothetical protein, at 76,118 to 76,441
_RS01650
HMPREF1058_RS01645: HMPREF1058_RS01645 - RNA methyltransferase, at 76,513 to 77,268
_RS01645
Position (kb) 75
76
77 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 74.145 kb on + strand, within HMPREF1058_RS01665 at 74.175 kb on + strand, within HMPREF1058_RS01665 at 74.252 kb on + strand, within HMPREF1058_RS01665 at 74.277 kb on + strand, within HMPREF1058_RS01665 at 74.277 kb on + strand, within HMPREF1058_RS01665 at 74.403 kb on + strand at 74.403 kb on + strand at 74.433 kb on + strand at 75.519 kb on + strand, within HMPREF1058_RS01655 at 75.519 kb on + strand, within HMPREF1058_RS01655 at 75.520 kb on - strand, within HMPREF1058_RS01655 at 75.524 kb on + strand, within HMPREF1058_RS01655 at 75.638 kb on + strand, within HMPREF1058_RS01655 at 75.639 kb on - strand, within HMPREF1058_RS01655 at 75.640 kb on + strand, within HMPREF1058_RS01655 at 75.640 kb on + strand, within HMPREF1058_RS01655 at 75.641 kb on - strand, within HMPREF1058_RS01655 at 75.641 kb on - strand, within HMPREF1058_RS01655 at 75.643 kb on - strand, within HMPREF1058_RS01655 at 75.643 kb on - strand, within HMPREF1058_RS01655 at 75.756 kb on - strand, within HMPREF1058_RS01655 at 75.757 kb on + strand, within HMPREF1058_RS01655 at 75.760 kb on - strand, within HMPREF1058_RS01655 at 75.809 kb on + strand, within HMPREF1058_RS01655 at 75.809 kb on + strand, within HMPREF1058_RS01655 at 75.810 kb on - strand, within HMPREF1058_RS01655 at 75.811 kb on + strand, within HMPREF1058_RS01655 at 75.811 kb on + strand, within HMPREF1058_RS01655 at 75.893 kb on - strand, within HMPREF1058_RS01655 at 76.146 kb on - strand at 76.171 kb on + strand, within HMPREF1058_RS01650 at 76.175 kb on + strand, within HMPREF1058_RS01650 at 76.175 kb on + strand, within HMPREF1058_RS01650 at 76.176 kb on - strand, within HMPREF1058_RS01650 at 76.176 kb on - strand, within HMPREF1058_RS01650 at 76.365 kb on + strand, within HMPREF1058_RS01650 at 76.365 kb on + strand, within HMPREF1058_RS01650 at 76.366 kb on - strand, within HMPREF1058_RS01650 at 76.378 kb on + strand, within HMPREF1058_RS01650 at 76.380 kb on + strand, within HMPREF1058_RS01650 at 76.381 kb on - strand, within HMPREF1058_RS01650 at 76.443 kb on - strand at 76.444 kb on + strand at 76.444 kb on + strand at 76.444 kb on + strand at 76.445 kb on - strand at 76.445 kb on - strand at 76.445 kb on - strand at 76.445 kb on - strand at 76.491 kb on + strand at 76.505 kb on + strand at 76.614 kb on + strand, within HMPREF1058_RS01645 at 76.617 kb on - strand, within HMPREF1058_RS01645 at 76.619 kb on - strand, within HMPREF1058_RS01645 at 76.630 kb on + strand, within HMPREF1058_RS01645 at 76.847 kb on + strand, within HMPREF1058_RS01645 at 76.848 kb on - strand, within HMPREF1058_RS01645 at 76.878 kb on + strand, within HMPREF1058_RS01645 at 76.879 kb on - strand, within HMPREF1058_RS01645 at 76.879 kb on - strand, within HMPREF1058_RS01645 at 76.939 kb on + strand, within HMPREF1058_RS01645 at 76.940 kb on - strand, within HMPREF1058_RS01645 at 77.005 kb on + strand, within HMPREF1058_RS01645 at 77.006 kb on - strand, within HMPREF1058_RS01645
Per-strain Table
Position Strand Gene LocusTag Fraction Rhamnogalacturonan from soy bean pectic fibre 2.5 mg/ml (C) remove 74,145 + HMPREF1058_RS01665 0.39 -2.6 74,175 + HMPREF1058_RS01665 0.47 -3.6 74,252 + HMPREF1058_RS01665 0.67 -2.1 74,277 + HMPREF1058_RS01665 0.74 -2.2 74,277 + HMPREF1058_RS01665 0.74 -0.6 74,403 + -1.7 74,403 + -0.9 74,433 + +0.2 75,519 + HMPREF1058_RS01655 0.40 -0.5 75,519 + HMPREF1058_RS01655 0.40 -2.8 75,520 - HMPREF1058_RS01655 0.40 +1.9 75,524 + HMPREF1058_RS01655 0.41 -2.5 75,638 + HMPREF1058_RS01655 0.52 -0.9 75,639 - HMPREF1058_RS01655 0.52 +0.5 75,640 + HMPREF1058_RS01655 0.53 -1.0 75,640 + HMPREF1058_RS01655 0.53 -1.9 75,641 - HMPREF1058_RS01655 0.53 -3.8 75,641 - HMPREF1058_RS01655 0.53 -1.3 75,643 - HMPREF1058_RS01655 0.53 +1.3 75,643 - HMPREF1058_RS01655 0.53 -1.0 75,756 - HMPREF1058_RS01655 0.64 -0.1 75,757 + HMPREF1058_RS01655 0.65 -2.3 75,760 - HMPREF1058_RS01655 0.65 -3.2 75,809 + HMPREF1058_RS01655 0.70 -0.7 75,809 + HMPREF1058_RS01655 0.70 -0.2 75,810 - HMPREF1058_RS01655 0.70 -1.1 75,811 + HMPREF1058_RS01655 0.70 -1.1 75,811 + HMPREF1058_RS01655 0.70 -1.5 75,893 - HMPREF1058_RS01655 0.78 +0.0 76,146 - -0.4 76,171 + HMPREF1058_RS01650 0.16 +4.6 76,175 + HMPREF1058_RS01650 0.18 +0.5 76,175 + HMPREF1058_RS01650 0.18 +0.9 76,176 - HMPREF1058_RS01650 0.18 +1.0 76,176 - HMPREF1058_RS01650 0.18 -0.1 76,365 + HMPREF1058_RS01650 0.76 -0.7 76,365 + HMPREF1058_RS01650 0.76 +0.2 76,366 - HMPREF1058_RS01650 0.77 -0.2 76,378 + HMPREF1058_RS01650 0.80 +0.7 76,380 + HMPREF1058_RS01650 0.81 -0.0 76,381 - HMPREF1058_RS01650 0.81 -1.8 76,443 - -0.8 76,444 + -0.9 76,444 + -0.3 76,444 + +0.7 76,445 - +1.5 76,445 - +0.8 76,445 - -0.4 76,445 - -0.5 76,491 + +0.7 76,505 + +1.8 76,614 + HMPREF1058_RS01645 0.13 +0.3 76,617 - HMPREF1058_RS01645 0.14 +2.3 76,619 - HMPREF1058_RS01645 0.14 +0.0 76,630 + HMPREF1058_RS01645 0.15 +0.3 76,847 + HMPREF1058_RS01645 0.44 +0.6 76,848 - HMPREF1058_RS01645 0.44 -1.5 76,878 + HMPREF1058_RS01645 0.48 -0.1 76,879 - HMPREF1058_RS01645 0.48 -0.7 76,879 - HMPREF1058_RS01645 0.48 +0.4 76,939 + HMPREF1058_RS01645 0.56 +0.0 76,940 - HMPREF1058_RS01645 0.56 +0.6 77,005 + HMPREF1058_RS01645 0.65 -0.7 77,006 - HMPREF1058_RS01645 0.65 -1.0
Or see this region's nucleotide sequence